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GT17852

CSHL Arabidopsis genetrap mutant lines

Original: GT17852

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17852

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3374567 [Map]; Strand: w
      • AT5G10690.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing pro...
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: GT17852 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATCCCT 
    CAGATCGAAG TGACATTTGA CATTGATGCC AATGGCATTG TCACTGTATC 
    CGCCAAGGAC AAGACGACTG GTAAAGTACA ACAGATCACA ATCCGATCCT 
    CTGAGTGTTG CGCCTTCCAA GACGAGCACC ATCAATTCCA AATGAGTTGC 
    TACTGATACA GATTTAGTTC TTTCAATATA TTCACTTTTG TCAGAAAGAA 
    AATGAACAAG AAACAAAACC TTGTTCCCTA ACCTTGTTCT TCTTCGAGTT 
    CTCTTGCAGC CTATGCTGTT GGAGATTCCT TCTTCCCTTG CACCCCTTCC 
    TTCTTTGTTC CTTCCTCTGG TAATTCTTCT ATTTGAGCCT TTGTTTCGGC 
    TGTTTCTTCT TTCACTCTGC TGCTTTCGCT CTCTTCCTCT TTAACTTCTG 
    CTTCTTCCTG TTCCTCTTGT TTACTTTTTT CGAAATTCAC AGCTTCATTC 
    ATATTCTGGT AGTAGTAGCA ACTGTCTCGC TATTTTCCTC ATCATCAACT 
    TTCTTGCTAT CAAACTCCTC ATAGATCTCA ATCTTCTTGC TATCGACCAA 
    CACTTCTCGT CTCTTCTGCC TAAACCCGCG GAACAAATCA CTCGTCTCAT 
    CCAAAACCGA AACATACTCA GGCTGGTGGC TCTCAAACTT ATACTCCTCA 
    ATGATCTTCA ACTCTTTTGC CTCAGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2981312 [Map]; Strand: c
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17852 - 5-prime edge 
    CTGCTGAGGG ACTCCTCTTG GAGATGGTGG AATGCCAACT AGATCAAATT 
    CTCCCAAGAG CTTGTTGTCT GTTGCCATTT CACGCTCACC TTGAAGCACC 
    CTGATCCCAA CTTGAGTCTG ATTATCGGCT GCAGTTGAGA ACACCTTCAA 
    GAGAATGAAA CGAGACAATC AACATTTTAG TAAAAACTTG ACAAAAACAA 
    TGGTAGCTTT GGATGGCTCA TAAATTAGTA TATATCACAG GAATGTGCTT 
    TCATGACCCC TGTTAAAGAA GAACCAGAGA GATCTCGAGC GTACAAAGAG 
    AATCGAAGAG ATTGTGATTG CAAAAGTGTT ACTTATATAG AGAAGAGGAG 
    ATTCTGTGTT CGTAGTTGGA ATAGGAATCG CAGGAGTTAT AGAGATAAGA 
    GCTCCGGTCC CAAGTCATTT TCGATTTGGA GGACTCGCAT AGAGTTTTAA 
    ATTTTTTAAT TTTTTTAACA AACGCAAAAA TTAGCCTGAT TAAAGTTATT 
    GATAGAAATT GCATTAAAAA TTAAAACATC ATCACTGCAA ATAAAACAAT 
    ATTTTAACTC ATCTTTTCCT GAAATTGAAG TTGACAAATT TCATGAAGAA 
    AACTTGTAGC AAAAAGAGTA ACGTAGCAAC AGAACTTTGG TAAACATTTA 
    TTACATCATT CAAAAAAGGT CTGAGAACAA AGAAAAGCAA CAAACATACC 
    CCCAAAAAAG CCTCGAATCC AAAGAAACAG GTGCTAAATC TTTACCTTTT 
    CAAGACAGAG TTTA

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10690.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR