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GT17854

CSHL Arabidopsis genetrap mutant lines

Original: GT17854

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17854

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2930571 [Map]; Strand: c
      • AT3G09540.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT17854 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAATATC 
    AGCCACCATT TTTTCTTAAG ATATATGCAA GCAAAATACA GAATCCAACA 
    AATGGTTAAT TTGCTTTTTT TTTTTTCCCC CCAAAAAACA AAATACGGGG 
    GTTTTAAAAA TTTTTTTTTT TTTTTAAAAA CCCGGGGGGG GTTTGCCCCC 
    TTTGGGGGGT TTGGGGGGAA AAACCCCGGG GAAAATTTTT TTTTTTTTGG 
    GGGGGCCCAA AAAGAAAACC CCCCATTTAA AAAAAAAAAA CCTTAAAACC 
    CCCAAAATTG GGGGGAAAAA AGGGGGAAAA GGGGGCTTTT TAAAATTCCC 
    CCCCAAAAAA GGGGGGGGGG GAAACCGGCC CTTTTAACCC CCCCGGGGGG 
    GGGGGGGAAA AACCTTGGGC TTTTCCGGGG GAGGGGGGGG GGGGGGGCCC 
    CCCGGGGAAA AAAGCCCCCC CCCCCTGGGG GGGCCCGGGG GGGAAAAACA 
    AACCGGGGGG GGGGGGGGGG GGGGTTTTTA TGGGGGGGGG AAAAGGGAAA 
    AGGGGGCCCC CCCCGGAAAA AAAAAACCCC CCCGGGGGGG CCCCGGAAAC 
    CCCCCAAAAC CCCCCCCCCC CCAATTTTAA AAAAAAGGGG GGGATCCCTT 
    TCCCGCCCGT CCCCCTTTTT GGTTTTGGGG GAAAAAAAGC CCCTTTTTTC 
    CCCCGGGGGG GGCTTTTGGG GGAACCCCCC CAAAAAATTG TTTTTTTTTT 
    GGGGGGGAAG AGAAAAATTT TTTTTTTTTT TTGGGGGCCC CCCCCCACCC 
    TTTTTTTTTT TTTTAAAAAA AAGGGGGGAA AAAGG

AT3G09540.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G55140.1); Has 1920 Blast hits to 1910 proteins in 308 species: Archae - 2; Bacteria - 1025; Metazoa - 0; Fungi - 186; Plants - 681; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR