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GT17860

CSHL Arabidopsis genetrap mutant lines

Original: GT17860

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17860

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17831220 [Map]; Strand: w
      • AT4G37920.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -755; Region: promoter
      • AT4G37925.1 - [+] show detail - subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17860 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT TTGGTGGTCA 
    GTGGCTAAGC AGTGTCACAC GTCACGTTAG GATCTACGCT GCTTATATTG 
    ATCCAGAGAC TTGTGAGTTT GACCAGTCAC AAATGGATAA ACTCACTTTG 
    ATTCTTGATC CTACTGAAGA ATTTGTGTGG GATGATGAAA GCTGTAACAA 
    GGTCTATTCT TATTTCCAAG AACTCGTCGA TCACTACGAG GTAACGATAA 
    CAATAAACGA ACGAAACATT CATCNTAAAA GTTAGACTCA TTTCAAGAAG 
    ACCTTATAAT ATTGTTTTTG AACAGGGAGC ACCATTAACG GAGTACACAT 
    TGAGATTGAT AGGATCGGAC GTAGAACATT ACATAAGGAA GATGTTGTTC 
    GATGGAGAAA TACAATACAA TATGGATGCA AGAGTTCTTA ATTTCAGTAT 
    GGGAAAGCCT CGTGTACAAT TCAATACCAG TAACATTGAA GGTGGTGGAG 
    ATGGTCAGCC TCAAGAGGAG GCTTAGTGAA ACAAACTCTA TTTTATAATC 
    ATGTAATGGG AATATAAATA TATTGTAGTA TGCTTTTTAA TTTTGTCTAT 
    CACAAAGTAA CATATGTATA TATCATGACA TATGCTATAA TTATTTTTGT 
    AATAATCAAT CTTAAGTTTC TTTGTCTTTT CTTGTTAATG TAAGGTCTTA 
    AGGTCATGTG AATATGTAAT GTCAAAGAAA CTCAATTCTG GTCTTGCTCA 
    TTCATGTTCC TTACTCCTTG CC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17831301 [Map]; Strand: w
      • AT4G37920.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -836; Region: promoter
      • AT4G37925.1 - [+] show detail - subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17860 - 5-prime edge 
    ACTTTATCGC CCTACCCTTG CTCTTCACGT TCAGCTGTTT CTCCACTGGT 
    CTCAATGGTG TTGGCTGCTT CTNCATCTTC CTCGACGATT GCTCTTCTTT 
    GAGTGTCTCT GTTTCTTGTA CTTCAAGAGT ACTGTCTTGT TCCGGATTTG 
    TCACCACGAA CGCCTTTTGT GTTGTTCTTG GTCGGATTTG AGCAACCATA 
    GAAGGATGTA ATAGAGAAAG CTTGGTGCAG GCAGTGTAAG AGAATGCTGC 
    AACCATTTTT CTGTCTAAGA AATGAAAAAA AAAAACCAAA CCAGTTTTTA 
    AAATGTTGCC GGGTAACAAA CCCTTTTTTT TGAAAAAAAT TTTGAGGAGG 
    TTAAAAAAGG CCCCCCCTTG GGGAAAAACC CCCCCCCAAC TCCAAGTTCC 
    TAATTAACCC CTTCCCCGTT TGGGGGGAAT TTGGGGGTAC CCCTAAAGCC 
    CTTGGGGACC AAAAAAAAAT TTTTTTAAGG AAATCCCCGG TTTGGTGGAA 
    GGGGTTTTTT TGGCCAAAAA AATTTTTTTT TGGGGGTTTG GGGGAAAATT 
    TTACCAAATC TTTTTTTTTC CCAAAGGGGG AAAAAAAAGT TTACCGGGAA 
    CCACCAAACC TTCCCGGGGA ATTTCAAGCC TAACCAAAAA ACCTTTGGGG 
    GGGAAAAAAG TTAAGTCTTG GAACTCCGGG GTTCTTTTCC CAACCCCATT 
    TGTGGGAAAT GGTTA

AT4G37920.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36320.1); Has 123 Blast hits to 120 proteins in 40 species: Archae - 2; Bacteria - 11; Metazoa - 8; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37925.1

Model type
Protein coding
Short Description
subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex
Curator Summary
Encodes subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.
Computational Description
subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (NDH-M); FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); CONTAINS InterPro DOMAIN/s: NAD(P)H-quinone oxidoreductase subunit M (InterPro:IPR018922); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR