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GT17869

CSHL Arabidopsis genetrap mutant lines

Original: GT17869

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17869

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 187039 [Map]; Strand: w
      • AT4G00430.1 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: intron1 (CDS)
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT17869 - 5-prime edge 
    CCTACTTTCT CCCTGCATCT AGATAAGCCC AAGCATCAAA AGAACCCAAA 
    GTTTCCTGCT TTATAACTGT TTTTGGTTCC TTTACATTTT CTAGGTCAAA 
    CAGAGCATGA ACAAAAACAG AGGACTCACA TAATGGTTTT CAGAAACAAA 
    ACAGAGCAAA TAAAGCAGAA CCAAAACAGA GAACCCACCA AAACAGAGAT 
    TACAGAAAAA TGGGAAAATC GAGAGAAGGT TACCTGAAAT TCCAGCAGTA 
    CAGTAGACAA GAGCAAAGAT CATGCCACCA AAAGCCCAAG CGATACCTTG 
    GATTCCAACA GAAGCACACA TGTTTGGTGC TCTCTTAACT CCCATTACAG 
    TCAAAACAGT GATGTAGAGA AACAAGAAAG TAGCGATAAA CTCAGCTATT 
    CCGGCTCTGT AGAAAGACCA TGAGCTGAGC TCGCCGGGCT CGAACAGTGG 
    CGCAGGAGGT GGCTCTTTGT AGTCCTTGTC GGTGGACTGA GCCGATGTAC 
    CGATGGGTTG CCTCTCCGGG AACTTGTTAG CTCCCACTCG TACATCTTCT 
    TCTTTGCCTT CCATTTCTCT CCCTCTCCCT CTT

AT4G00430.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
plasma membrane intrinsic protein 1;4 (PIP1;4); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.1); Has 10702 Blast hits to 10683 proteins in 2216 species: Archae - 88; Bacteria - 5147; Metazoa - 1472; Fungi - 442; Plants - 2512; Viruses - 2; Other Eukaryotes - 1039 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR