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GT17877

CSHL Arabidopsis genetrap mutant lines

Original: GT17877

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17877

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 232301 [Map]; Strand: c
      • AT4G00525.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT17877 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAATT 
    GTCAAGTATT CACAGTATCG TAGAGAAACA TAAGCTTGCA GTGATTCTTT 
    TCTTCTTCCT CTCTTATCAG TATGATATAT CAATCAATCT GCTGTGTTTT 
    ATATTTAATG CAGAAAATAG GCGCATAATA ATGTTGTAGT TCATAAGAGA 
    CTTTGCTTGA GAAGAGTTCA TAGTATTGTA GAGATACACA AGAGCCTGCA 
    CTGATCTTTG TCATCTTCCC CTCATATCAG TTTGCTGTAT TAACCAATCT 
    TCGGTGTTTT TCTTTTAAAT GCAGAAGCAC AGGTACCTGG TGTGTTGGAA 
    GAGCAAGACT CTGAAGAGAA ATGGATTCAG CTCAAGGAAA GAATGTCGAG 
    GAACGCTGCG AATATACCTA AAGTTGTAAA GAGAATGCGA GAATGTATAG 
    AGAGTATCGA CAAACTCGAT TCTTTGGAAG TTACCATTCA CCCGGCATTC 
    AAAAGGCAAA GAATTAACTG ACTATTTCTC CTTCATGCTT AGGCTCTCCA 
    TAGTATTTTC TTAGGAAAGA TATGTGTGCT GATTTGTGAA TATGTAATTC 
    TAGATTGATC TGGCATGTAC ATTGGTGTCG TTTGATTCAA AACATTCACA 
    ACATGATATT TGATTGTGCA AGTACTAGGG AAGAGATTAA GACTTGTTAC 
    TGGAAACAAA GTCAAAGTAA AGGGTTAAAC CATAGTTGTT GATCACAAAA 
    GTAGATTGAC AAACATTTCT AGCTAACATG TTCATGTAGC AGTGTCAGAT 
    GGTTCTTTAC CAGATGGCTC TCCCTTTGGT CCAAGATGAA TTGCTTCACA 
    GAATCTTGTG CTGCTAATAT CTTCCTTTTG ATCTGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 152368 [Map]; Strand: w
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -456; Region: promoter
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17877 - 5-prime edge 
    CCTACTTTCT CCTAATCACA AGCATCTTCG TTGGCCATAT CGGCGATCTT 
    GAGCTTTCTG CCGTCGCCAT CGCTCTCTCC GTCGTCTCTA ATTTCTCCTT 
    TGGTTTCTTG GTGATTAAAA TAACCTTCCT CTACTCTGCT TTTTTCCTCC 
    TCTGTTTCTT GCGTTTTCTC TAACTTTCTA GAAAAAAACT GCAGCTGGGA 
    ATGGCGAGTG CGTTGGAAAC GTTATGTGGA CAAGCGTTTG GAGCGGGACA 
    AATGGATATG TTAGGTGTTT ATATGCAGCG TTCTTGGCTT ATCCTCCTCG 
    GAACTTCCGT CTGCTTGCTT CCTCTCTACA TCTACGCAAC TCCACTTTTC

AT4G00342.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00525.1

Model type
Protein coding
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR