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GT17880

CSHL Arabidopsis genetrap mutant lines

Original: GT17880

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17880

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11999959 [Map]; Strand: c
      • AT2G28150.1 - [+] show detail - Domain of unknown function (DUF966)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17880 - 3-prime edge 
    AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT ACTCCAGAGT 
    GATAGATCTG GCAGAGAACA ATGTCGGAAT TAGCCAATTA GGTCGCCGAG 
    ATAAAAACAT GGAAGCGAGG ATGAGGAAGT ATAGCAGAGA AGTGAGTCCA 
    GAGAGAGCAA AAGTCTGGAC TGAGAAATCA CCAAAGTATC ATCAAAAGAT 
    CAAGAAAGTT CAAATTGTTT ATTACCTCTC CAAGAATCGT CAACTTGAGC 
    ATCCTCATTT CATGGAAGTG TTGATTTCTT CTCCAAATGG TTTATACCTA 
    AGAGGTAATG TTATTATATA CTTCAAAGGT TTGTGAGATT TTGAAGAATT 
    ATGAAGAATT CAATTATGTT TTTGCAGATG TTATAGAGAG GCTTAATGTT 
    CTTAGAGGTA GAGGAATGGC TTCAATGTAT TCTTGGTCTA GTAAGAGGTA 
    TCTATATAAC TGTCTTGATT TCATTTATCA CTTCTTTTGT AGCTTTAGAT 
    TCAATGTTCT GCTGATTTAA CTCTGCAGAA GCTATAGGAA TGGTTTTGTT 
    TGGCATGATT TATCAGAAGA TGATTTGATT TTACCAGCTA ATGGGAATGA 
    GTATGTTCTT AAAGGTTCTG AGCTATTTGA TGAATCCAAT TCAGGTGAAA 
    AAAGCAAACA TTTTTTTGTT AATCTTTTGT TTCAATGAAG AAGCCTTAAG 
    AAAACCTATG TTGTTGTGCA CAGATCACTT TAGCCCAATT GTGAATTTAG 
    CTACTCAAAA CATGAAGCAG ATAGTTGTGG AGCCACCATC ATCTAGAAGT 
    ATGGATGAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11999895 [Map]; Strand: c
      • AT2G28150.1 - [+] show detail - Domain of unknown function (DUF966)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17880 - 5-prime edge 
    CTTTCTCCCT GCTCTGGAGG AACAAGAAAA CAGAGAATTA AGAAATGAAA 
    CGATGGTAGA GTTAGAGAGA ATCTAACAGA GCTCAAGGAT GAAGAAGAGA 
    GATAGAGACT AGAGAGAGAG AGAGTTTCAG CAATTAATGA ATTTTTTTAG 
    AGCAGTGGAG ATTAATGGAG AGACAGAGAG ACGACAGTAA CAGTGTTAAG 
    AGAGAGAGAG TTAAAGCTTT ATTTTTCAGA CAGAGCTATT TTGTTTTGTA 
    ACGAGGGAAA AAAACACTGA AAATCACTGT GATTTTATTC GCTCGTGTCT 
    TTTTCATCTC ACTCGA

AT2G28150.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF966)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 2510 Blast hits to 686 proteins in 184 species: Archae - 0; Bacteria - 433; Metazoa - 315; Fungi - 216; Plants - 186; Viruses - 4; Other Eukaryotes - 1356 (source: NCBI BLink).
Link
InterPro Scan - TAIR