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GT17882

CSHL Arabidopsis genetrap mutant lines

Original: GT17882

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17882

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 870812 [Map]; Strand: c
      • AT1G03475.1 - [+] show detail - Coproporphyrinogen III oxidase
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17882 - 5-prime edge
    TTCCATCCTA CTTTCTCCCT GGTCCTAATT TAAAGAAGAT GTTTGGTCTC 
    GACCTGGTGG TGGCGGTGGA ATCAGTCGTG TGTTGCAGGA CGGGAATGTC
    TTTGAGAAAG CTGGTGTTAA TGTCTCTGTG GTTTATGGTG TTATGCCTCC
    TGAAGCTTAT AGAGCTGCAA AGGGCTCAGC TTCTGATCAG AAACCTGGTC
    CTGTTCCGTT CTTCGCTGCT GGAGTCAGCT CGGTAATGAA TCTCTCCCTT
    CAATTTTACG ATTCTTGGAG GTTCTCATGT TTTATCATTA CGATTTCTGT
    GTGATTCTAG GTTTTGCATC CCAAGAACCC TTTTGCCCCA ACCCTGCATT
    TCAATTATCG CTATTTCGAG ACAGATGCTC CAAAGGGTAA AAAAGCTAAA
    GTCTCAGTGA GATTGTAAAG TTGTTGTCTT TTGTTTGGAC AACAGTCTTA
    AGTTTTTAAT TTTCAACGGC GCAGATGTTC CTGGAGCTCC AAGGCAATGG
    TGGTTTGGTG GTGGCACTGA TTTCACTCCT GCTTACATCT TTGAAGAAGA
    TGTCAAGCAT TTCCATTCGG TACTGAGCCT TATTCCTTGT TCTAAAGATA
    TGAGCTTTGT GATCATGGAG TTGCTTTTAT ATAAACTGCT CTTTGTTGTT
    GTAGATTCAA AAGCAAGCCT GTGACAAATT TGACCCTTCC TTCTATCCCC
    GATTCAAGAA GTGGTGTGAT GACTACTTTT ACATCAAGGT AAGTTTTGTG
    AGATCCTGAA GCATTTTCTG GAACT

AT1G03475.1

Model type
Protein coding
Short Description
Coproporphyrinogen III oxidase
Curator Summary
Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.
Computational Description
LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT4G03205.1); Has 4884 Blast hits to 4875 proteins in 1228 species: Archae - 0; Bacteria - 2144; Metazoa - 115; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2379 (source: NCBI BLink).
Link
InterPro Scan - TAIR