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GT17885

CSHL Arabidopsis genetrap mutant lines

Original: GT17885

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17885

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22501811 [Map]; Strand: w
      • AT3G60900.1 - [+] show detail - FASCICLIN-like arabinogalactan-protein 10
        Distance: -572; Region: promoter
      • AT3G60910.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17885 - 3-prime edge
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTCGAA 
    AGAAAGCGCG TCTTGCACGT AACGAGCGTC CCAATAGAGA GCGTCTCCAT
    AGTTGTAAGT GTTGCAGCTC GACACGTCCC TCTGCATCTT TCTCTCTCTC
    TCTAAAGATC CGATCTCAGA TTCTGCGGCG GAGCTTTTTC TCTTCGTCGT
    TGTTTTTGAC CAGCTTACGA AGTTTGGGCT TATTACAGGC CCAATACATA
    ATCATGTGAA GCTGAAGAGT GACACGTGCT CACACGTGTT ATTAGCCTCA
    TAATTGGGCT CAAAGTAAGG AATTAAAGCC TCATCTCCGC CCATTAATTA
    ATACGGAGTA ATAGTTTACT GATTTGTGAA GGTTTATTTT ATTTTTTTCT
    AATCAAATGA TAAAACTTTT GCAGATTTTT ACATGACAGT AGTAAACTAC
    GTATTTTGAT TTGTCGTTTT TATAAAAAAA TAATAATTTC TTTATCAGTG
    CTGTGTCGGG CAATTAGAAC CTTCTTTCCA TTTCTAAAAG ATGTTACCAA
    CTATTGACCA AGTATTTAAA ACTGATAACG ACACTTATTT ATGAGTCTAC
    TAAGTACTAA CGATATTCCT AGTTGTCAAG TAAAAATATC TAAATCCTTT
    TTATCTGAGT GCCTTTACAA AATTTTGGAT GATTATCTAA TGAGCATCCA
    TAAATAAGCT CAAATTTTAG TTAGCTACTT GACCATGGGT AACTCTAACA
    AGGATGATAA ATTGATAATG ATATAACGGT TCGGTTCGGT TGCTTTTGG
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22501898 [Map]; Strand: w
      • AT3G60900.1 - [+] show detail - FASCICLIN-like arabinogalactan-protein 10
        Distance: -659; Region: promoter
      • AT3G60910.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17885 - 5-prime edge
    AATGTTACTC TACTCTCCGC CCTTTTGTCC GCAGCTTCGT CTCTACTTCT 
    TCACGAGTCC TCATGGTTGG CTGTGGCAAC TCCCGTAATT CTCTCTCCTT
    TTGCCAATAG ATTTGAAGAA GTCTGTACCA GTGATTGAAT TTGACTTGAG
    CAGCAACCAA ATTTAATACA CTGTGATTGC CCTGTTCTTC TCTTTGGAGT
    AGTGATGTCA GAGGATATGG TGAAGGATGG GTATGAGGAC ATCATGAATG
    TTGATATCTC TTCAGTGGCT ATTGAGATGA TGCAAACCAA ATATGCATCT
    GTTCCTCAGC TCAAATGTAA CACTTCTTTT CACATCTCTA GTTTATATTA
    CTTTAGCTTT AGAAATATGT AAGTAAGAAG CTTTATCCTA TTATACTCTG
    TTTTTACCCA ACAGATATGC AAATGGATGT TAGAGATATG AGTTACTTTG
    AAGACGATTC ATTTGACACT ATTATTGATA AAGGTATGTT GCAACAACCA
    CCAATTACTC TGTTTTTATG GTGAAAAGCT TAGAAGTGAT ATATTGTTAC
    CT

AT3G60900.1

Model type
Protein coding
Short Description
FASCICLIN-like arabinogalactan-protein 10
Computational Description
FASCICLIN-like arabinogalactan-protein 10 (FLA10); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 8 (TAIR:AT2G45470.1); Has 12874 Blast hits to 6768 proteins in 802 species: Archae - 107; Bacteria - 3922; Metazoa - 1175; Fungi - 784; Plants - 2143; Viruses - 697; Other Eukaryotes - 4046 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60910.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G17365.1); Has 1732 Blast hits to 1731 proteins in 520 species: Archae - 43; Bacteria - 761; Metazoa - 337; Fungi - 50; Plants - 206; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).
Link
InterPro Scan - TAIR