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GT17894

CSHL Arabidopsis genetrap mutant lines

Original: GT17894

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17894

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 151846 [Map]; Strand: c
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: 0; Region: exon1 (CDS)
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: -73; Region: promoter
    Flanking Genome Sequence: GT17894 - 3-prime edge 
    AAGGTATTTT ACCACCGTTA CCGACCGTTT TCATCCCTAA TCTTAGGCAA 
    ACCAGAAACA CAAATTACAA GAACAAACAT AAAAAAGAAT CTCTTGTCTT 
    GTCTGCTTTC AATCCTCATG TCTCTAATCC TCCCCAAGTA GAGAAATATA 
    AAAACTAAGA CAAATATTGC CACAACCGGT GAAAATGGAA ATCCCGGTTC 
    GAGAGGAGAG AAGATCCTCC TCATCCTCTG CCGGACCATT ACAACAAACC 
    ATCTCCTTAG CAGCTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 121779 [Map]; Strand: w
      • AT4G00270.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: -3202; Region: intergenic
      • AT4G00280.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane...
        Distance: 630; Region: intergenic
    Flanking Genome Sequence: GT17894 - 5-prime edge 
    TCCTACTTTC TACCCATCGA TGAATATGGC TTATCTTAAT ATATTATAAA 
    AATCTTTAAG CTTGAATGAT AATACATATA CCTCATCAGG TGTATGATAT 
    TCTCGAATTC AAAATAGAAA GCGAAATGTG TTCCACTCTA CACCTCTCAT 
    TTTGGTGTAA AGTCCCATCA ATTTAAGAAG CTTCGCCTTT CTTCCTCACC 
    TTACTATTAA GTCATGCATG CTAATGTAGA TGAAGCTTGT GGACGCTAAG 
    AAATGTGAGT TGTTGTTGGA GAAGATGGAT GTTTTGAAGG AGGTGACTTC 
    GGTGCTTGCT CAAACCAACT AAGAAGAAGA AGAGGAAGCT ATTGGATTGT 
    ATTATAGGTT TATCGGTTTT TAATCTCGGG TTTCAATGGA GATGTAATGC 
    CTTCTTTTGT TATCTAACTT AGGA

AT4G00270.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT2G25650.1); Has 282 Blast hits to 277 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 255; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00280.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase protein (TAIR:AT2G19210.1); Has 19 Blast hits to 19 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00342.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR