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GT17898

CSHL Arabidopsis genetrap mutant lines

Original: GT17898

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17898

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16291569 [Map]; Strand: c
      • AT2G39010.1 - [+] show detail - plasma membrane intrinsic protein 2E
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17898 - 3-prime edge 
    TCTCTCTCTC TTTCTTTTTT GAGTCCGTGA AGGCTAATTT TGAACCAATG 
    ACGAAGGATG AGTTGACGGA GGAAGAGTCG CTCTCCGGCA AGGACTACTT 
    AGACCCACCG CCTGTGAAGA CGTTCGAGGT GAGAGAGCTC AAGAAGTGGT 
    CCTTCTACAG AGCTGTCATC GCTGAGAGCA TAGCTACTTT GCTCTTTCTA 
    TACGTGACTG TTTTGACAGT CATCGGCTTT AAGAGCCAGA CTGATATCAA 
    CGCCGGCGGC GGAGCTTGTG CCAGTGTCGG CCTCCTAGGC ATCTCTTGGG 
    CCTGTGGGGG CATGATATTC ATCCTCGTCT ACTGCACTGC CGGCATCTCT 
    GGTCTCTCTC TCTCTCTCTC TCTCTCTTTC CTTAACCATT TTTTGCATTA 
    TCTGATTTGC ATAGCAAAAT GCACATGCTT CA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16291434 [Map]; Strand: c
      • AT2G39010.1 - [+] show detail - plasma membrane intrinsic protein 2E
        Distance: -43; Region: promoter
    Flanking Genome Sequence: GT17898 - 5-prime edge 
    CTTTCTCCCT GGTTAGAAAT GTGGGTGATG TGCAGAGATG GTGAGTGGGT 
    CTATTTATGG AAAGCTGTGG CTTTAGGTTT TTCCTCTTTT GCAATGAGGT 
    TAATTAATTT ATCTTCTTCT TTTTTATTTA TTAAAAAGTT CGTAAAATAA 
    GGGAACACTA CAGGTGTTTA TGATTGTGAT TAGTCTATGA AGACTCTATT 
    GATGTCTAAA GAATATGCTT TCAATTGATT TTGATTTGGT TATTTTGCAA 
    CAATTTTGTT GGGGGAAAAA ATCACTAATT CCTCTCGCCT TTTTTTTGCT 
    GGTATTTTCC TATTAAGTTA TTTTACCCAC GAACAAACAA GCTAGTTTAC 
    AAAATTACAA TGGGCAAACA TTTCATGTAG ACTACTTGAT ACGAGGCTTT 
    GTGTTGGGCG CAATATCCTC ATAGCCGGAG CTAAACCTTT AAAGAGAAAT 
    TTTAAAATAT AAATTTTGGG TTTTTAATTT TTCTTTCTAA CCAAGTAACT 
    TTAATACCCG AATATGTTTA GGTTTAGTAT AACTGTCAAC CATTATTTAT 
    TTTTTCCTCA TATCACCATA ATTACAGAAA AATGATAGAA TGGTTGTATT 
    CATGTAATTA GCGTAGATTC TTAGATTTCA GTTCTTAAAA GACCAAAAAA 
    AATGCAAAAT AACAGACACT GATAGATGTT GCAAAGTAAT GAAAAAGACT 
    ACTTAATGAA AGAGTCGTCG CTCATACATT TAACGCAGAA AATATAAGAG 
    TAATTTAAAA TGCAAATTGG ACCGACCTTT AGTCGAAAAG TTTAACGCAG 
    AAAAATAAAA AGTAATTTAA ATGCTATTAC AAATTGAAA

AT2G39010.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 2E
Computational Description
plasma membrane intrinsic protein 2E (PIP2E); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2;5 (TAIR:AT3G54820.1); Has 10794 Blast hits to 10789 proteins in 2219 species: Archae - 81; Bacteria - 5177; Metazoa - 1475; Fungi - 441; Plants - 2519; Viruses - 2; Other Eukaryotes - 1099 (source: NCBI BLink).
Link
InterPro Scan - TAIR