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GT17939

CSHL Arabidopsis genetrap mutant lines

Original: GT17939

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17939

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17939 - 3-prime edge 
    CGTTACCGAC CGTTTTCATC CCTATATACA CATTCTACCC GACCGGATCG 
    TATCGGTTTC CGATTACCGT ATTTATACCG TTCGTTTTCG TTACCGGTAT 
    ATCCCGTTTT CGTTTCCGTC CCGCAAGTTA AATATGAAAA TGAAAACGGT 
    AGAGGTATTT TACCGACCGG TACCGACCGT TTTCATCCCT ATATACACAT 
    TCTACCCGAC CGGATCGTAT CGGTTTCCGA TTACCGCATT AATACCGTTC 
    GTTTTCGTTA CCGGAATATC CCGTTTTCGT TTCCGTCCCG CAAGTTAAAT 
    ATGAAAATGA AAACGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10774703 [Map]; Strand: w
      • AT5G28715.1 - [+] show detail - transposable element gene
        Distance: 4226; Region: intergenic
      • AT5G28720.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bac...
        Distance: -1428; Region: intergenic
    Flanking Genome Sequence: GT17939 - 5-prime edge 
    CGATCGGTTT ATTCGGTTTA AAGGGAACAC ATATAAAAGC CAAAAAAACC 
    TAAAACGAAG GCATTATTTC TCCCTTCACA AAAAAAAAAA GGGGACCTCT 
    TCTTTTTTCC AAAAATTTTT TCCCCCCTTT CCGGGTTTTT CCCCTTTTTT 
    AAAAATTCCC CCCTTTCCCC GGGGGGTTTT TTCAAAAATT TTTTAAAAAC 
    CCCCCCCCCC CCCAAAAAA

AT5G28715.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT5G28720.1

Model type
Protein coding
Computational Description
unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR