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GT17944

CSHL Arabidopsis genetrap mutant lines

Original: GT17944

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17944

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16616477 [Map]; Strand: c
      • AT4G34880.1 - [+] show detail - Amidase family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT17944 - 3-prime edge 
    ACCGTTACCG ACCGTTTTCA TCCCTAGATT TGTGTGACAT TTTACCGAGT 
    GTTTCTCTAT GTTTTGCTGT TAGGCCGATT TGTAGGACAG TGTCGGATGC 
    TGTCATTCTC ACTCGACAGA AAGNGGGTTA TGATCCATTG GACGAGGCCA 
    CGAAAACTGC GTCCGAGTTC ATACCTGAAG GCGGTTACAA GCAGTTTCTG 
    ACAACTAGTG GCCTCAAAGG TAAGAGATTA GGGATTGTAA TGAAGCATTC 
    ATCTCACTCG ACAAATCACA TCAAAACATT AAGGTAAAAT GCGTTCTAAG 
    AAAATTTTCA TCATCAGAGA ACACCATATC TAATTCTAGT TCTGGTTTTC 
    CTTGGATAAA GACGAGAAGG CGCTATTGTC ATTAACAATC TGACGATACC 
    AAACATCGAA GTCATTGTGG GTGGGACTGA TAGCGGGGAA GAGATAGCAC 
    TTTTGGCTGA GTTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16616398 [Map]; Strand: c
      • AT4G34880.1 - [+] show detail - Amidase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17944 - 5-prime edge 
    GATCGGTTTA TTCGGTTTAA GGGGAACACA TATAAAAGCC AAAAAACCCT 
    TGATACGAAG GCCTTATTCT CCCTTCCAAA AAAAAAAAGG GAGGCCCTTT 
    TTTTTCTCGG ATTTTTTTCC CCCCTTTCCG GGTTTTCCCC CCCTTTGAGA 
    CCTGCCCCCC TGGCCCCGGG GGGGTTCCTT CAAATTTTTT TTATAGTGAC 
    ACTGCCCCCC GAAAGGCTGT TACAGATATA GCTGATCCAC TACTTGACCC 
    AGACGGATTT GCTGATAAAA CATATGGATT CTGCAGCATT AGAATCTTTT 
    TGTAAGATGT TTGGTTTACC AAATAGTTAT AGAGAAATGA ATGTCTTGAA 
    TGAGGAGAGT AACCTTTCCT TGGAGGCCAC GTGCGCTCCA ACCATCTGGG 
    ATGGAGAAAG ATCGAAAATG AGCCCATTCA CTTAAACTGG CTTTGCCCAA 
    GATCACAGCA CCAGATTCTC TCAGATCTTT TAACAAACAC C

AT4G34880.1

Model type
Protein coding
Short Description
Amidase family protein
Computational Description
Amidase family protein; FUNCTIONS IN: amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; INVOLVED IN: acrylonitrile catabolic process, aldoxime metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Amidase (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: Amidase family protein (TAIR:AT5G07360.2); Has 15395 Blast hits to 15313 proteins in 2409 species: Archae - 237; Bacteria - 9126; Metazoa - 385; Fungi - 509; Plants - 293; Viruses - 0; Other Eukaryotes - 4845 (source: NCBI BLink).
Link
InterPro Scan - TAIR