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GT17946

CSHL Arabidopsis genetrap mutant lines

Original: GT17946

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17946

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14162594 [Map]; Strand: c
      • AT2G33430.1 - [+] show detail - differentiation and greening-like 1
        Distance: -73; Region: promoter
    Flanking Genome Sequence: GT17946 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTCT CGATGAAAAG 
    ATTTAATGGG CTTTGAGCCC AACTCATGTA AAGCCTTTAT AGTATATAAG 
    AAGATAAAAA TTCGAAGATA AAAACCAAAA CCCTATCCAC TTTACTCTAA 
    ACCTCCATTA CCTTCGTCTT TCTTCCTCAG TCGCCCTACA ATGGCTTTGC 
    CTTTGTCTGG CACGCGCCAC CTCACGCGCG CTCTCCTCTC TAATGTCACT 
    CTTATGGCTC CTCCTCGGAT TCCTTCCTCT GTTCACTACG GTGGATCTCG 
    GTTAGGTTGT TCGACCCGGT TCATCTCACT CGACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4403085 [Map]; Strand: w
      • AT3G13510.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -415; Region: promoter
    Flanking Genome Sequence: GT17946 - 5-prime edge 
    CCTACTTTCT CCCTGATCGA GAGGGGTAAA ACAGGGAAAT TTGGGAGATT 
    AATGTGGAAG AGATCCCCAA GGTTGTCTTC AAACCATAAA CACCACGTGA 
    CAGAGAGACC AATTATACTC AAAAAGGTAA AGACCAATTT GAAAAACATT 
    ACAATTTTAA TAATGCTCAT AGACTCATAG TTAAAGATTA CAAGAACCAA 
    CTAACTAATT GACATTATCA TTCATCAAAA TAAAAACCAC CTAATTGGGA 
    ATTTATAGTC TTACAGTGGG ATTGGTAAGA CGTTTCTAAT ATGCTT

AT2G33430.1

Model type
Protein coding
Short Description
differentiation and greening-like 1
Computational Description
differentiation and greening-like 1 (DAL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT1G32580.1); Has 251 Blast hits to 228 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G13510.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G55360.1); Has 759 Blast hits to 705 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 734; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR