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GT17954

CSHL Arabidopsis genetrap mutant lines

Original: GT17954

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17954

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 80692 [Map]; Strand: c
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT17954 - 5-prime edge 
    TTTACTGTCC GTACAGTTAG GAGGCGTGAA ACGTATTTGG GCCGTCCGTG 
    GAGGTCGTAC GCACGGACCG TGGTGATCGG AACGTATCTT GATACGTTGA 
    TCGAACCCAA CGGATGGATT GATTGGGATA ATGTAACGGC TCTAAGCACG 
    TTGTATTATG GGGAGTATCA AAACTCGGGA CCGGGTTCGG GGACAGAGAA 
    CCGGGTTGAT TGGGCCGGGT TTCACGTGAT ATCTGATATC CAAGAAGCTC 
    GAGAGTTTAC GTTACCCAAT TCATCGACTC TGCTTCATGG TTACCGCCTA 
    CCAAAGTGCC TTTCACCATC AATCTCTAAT AATATATTAG AACACATTTT 
    TGTAACGTTC ATTTCCAACT CGACCATTCG ATTTTTAGTT TTATTTTCCT 
    ATTAGAGCCC ACATGTGACA TGTTGGCATT TTACACAATA GCATGTACTG 
    TTTCGTCTTC TGTTTTTGTT TCCCCTACAA ATTTCAATAA AACTTATAAT 
    ATTCGTTTTG GTTTTTG

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR