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GT17962

CSHL Arabidopsis genetrap mutant lines

Original: GT17962

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17962

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 42812 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17962 - 5-prime edge 
    CTACTTTCTC CCTGACACCA GGCACGATCC TCTTGAGAAT TCGGATCTTC 
    TCGCTGATCC TTTCCCGACG CCGACGAGCA ACCACCGTCT GAGGATCGTC 
    GCTTATCCTT ACGTTACGGC GGTTCGGCTT AGGGACCGTG GCAGGGTCGA 
    TGTCTACGGG CTGCATGACG GCGATCATGT ACTGCATCTC CTTCATCGCA 
    TCCATGTATT CATCGTACTC GTCGACTTCG ACCAAGTGAA TTAGGGTTCC 
    GGGAGGTGGA TCTAACATGA GATGGTGAGG ATCATTGAGA AAAGCTGCGT 
    GTTCTTGTGT GAGAAGATCA TTAGCTTTGT TTCCAATCCA TGAGGAGATG 
    GTGAGGCTGA GGCTCCATCA TGCTTCTTTT GGGGCTGTGG TTGGATCTGC 
    TTTT

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR