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GT17978

CSHL Arabidopsis genetrap mutant lines

Original: GT17978

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17978

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 647569 [Map]; Strand: w
      • AT4G01510.1 - [+] show detail - Arv1-like protein
        Distance: 3233; Region: intergenic
      • AT4G01515.1 - [+] show detail - transposable element gene
        Distance: 123; Region: intergenic
    Flanking Genome Sequence: GT17978 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CAATACTATC 
    AAAGTGACTA GCATACCAAC CGAGGTGAGT CCAAATTTCT GAAATGTTTC 
    AGTACTCATT AGTATCGAGC GGTTTCTTTA CTTTGCTTCT TTAAATTCAG 
    GTTAAGCAGA CAGGTCCAGA AAACATGTCT TTCAGCGAAT ACAACAACAA 
    CAACCCGAAT GTGCAGCTAC AAACTCCTTA CTTAGGGGCA GCTCAACATT 
    TGCTTTTCGA TCAAGAAATG CAAGAGAAGT ACAGGTCGTC AAACGATTCT 
    ATCAAAGCTA TTAACACAGC TCCTGGGGTG TGTCTAGTTT CTGACATGTT 
    TCATTAATCT CAAGTACATG A

AT4G01510.1

Model type
Protein coding
Short Description
Arv1-like protein
Computational Description
ARV2; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT1G01020.1); Has 318 Blast hits to 318 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 116; Plants - 41; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01515.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.1e-18 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR