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GT17979

CSHL Arabidopsis genetrap mutant lines

Original: GT17979

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17979

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17469178 [Map]; Strand: c
      • AT5G43490.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: intron1 (CDS)
      • AT5G43500.1 - [+] show detail - actin-related protein 9
        Distance: -497; Region: promoter
      • AT5G43500.2 - [+] show detail - actin-related protein 9
        Distance: -769; Region: promoter
    Flanking Genome Sequence: GT17979 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCAAAC 
    CATATATCAT ACGATGGTTA ATATGGCAAC TACACTCCTC ATTCACCAGA 
    CAGAGAATTG GATCAGAGAA TAACTCACCA TACAGGAATC CTTATCGGTT 
    TATTATCCTC ACTCGACAAT TGAAATCAAG AATCGTTAAA GATAAAATAC 
    GAAGATAAGT ATCCACATAT ATACCAAATC ACGACATTAC TTTTGAGGCT 
    TTTATAAAAA AAAATCTCGG TAATAATTTT ATCTTATCTG TTTATTTT

AT5G43490.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G43500.1

Model type
Protein coding
Short Description
actin-related protein 9
Curator Summary
encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.
Computational Description
actin-related protein 9 (ARP9); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G43500.2

Model type
Protein coding
Short Description
actin-related protein 9
Curator Summary
encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.
Computational Description
actin-related protein 9 (ARP9); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR