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GT17985

CSHL Arabidopsis genetrap mutant lines

Original: GT17985

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17985

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 149322 [Map]; Strand: w
      • AT2G01280.1 - [+] show detail - Cyclin/Brf1-like TBP-binding protein
        Distance: 0; Region: exon17 (3UTR)
      • AT2G01290.1 - [+] show detail - ribose-5-phosphate isomerase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17985 - 5-prime edge 
    CATCCTACTT TCTCCCTGTG CTCACTACTC CCGGTAGCCT CAGAATCGCA 
    TCACTCACTG CTCCCAAATC TCCCATATCC TCTTCCACAT GCATATCCAC 
    TATGTAATTC CCATTGTCTG TCACAAAGGC CTTCCCTTTC TCTCCCAAAC 
    GAAGATTCGC TTCACACCCG TATCCTTCCA GCAGACTCCG GAGCTTCTCC 
    GCCGTGAATT TCCAGCAAAA GGGCACTATC TCCACCGGAA GAGCAAGCTT 
    GCTTCCACCA ATATGCTTCA CCATCTTGGA CTCGT

AT2G01280.1

Model type
Protein coding
Short Description
Cyclin/Brf1-like TBP-binding protein
Computational Description
maternal effect embryo arrest 65 (MEE65); FUNCTIONS IN: RNA polymerase II transcription factor activity, cation:chloride symporter activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT3G09360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01290.1

Model type
Protein coding
Short Description
ribose-5-phosphate isomerase 2
Curator Summary
Cytosolic ribose-5-phosphate isomerase. Knockout mutation causes chloroplast dysfunction, late flowering and premature cell death.
Computational Description
ribose-5-phosphate isomerase 2 (RPI2); CONTAINS InterPro DOMAIN/s: Ribose-5-phosphate isomerase, type A, subgroup (InterPro:IPR020672), Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: Ribose 5-phosphate isomerase, type A protein (TAIR:AT1G71100.1); Has 5035 Blast hits to 5035 proteins in 1937 species: Archae - 235; Bacteria - 3542; Metazoa - 112; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).
Link
InterPro Scan - TAIR