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GT17991

CSHL Arabidopsis genetrap mutant lines

Original: GT17991

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17991

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24455608 [Map]; Strand: c
      • AT5G60790.1 - [+] show detail - ABC transporter family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17991 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAACTC CGGTACAAGT 
    CCGATCAGAA ATTTGAAGAG CATCGACACC GCTTGACAAG CTATCAACAC 
    CGTTGGAAGA AGTAGCGGCG GATTTGGATG GAGCAGCAGC TTTACCACCT 
    CTTTTAGCGG CGGCAGCAGC TTTCTTCTGA GCTGCCTTCT TCTCGCTCGA 
    CTAAGACACC ATCTTCAAAT TATCTCCCTG AGAAAACAGA TCAAATCCAA 
    ACTATAAGAA ATCAAACCGT GGAGAATACG ATAGAGATAA TAGAATCAAC 
    GAATCGTGGA AGAGGAAATA GTAAATTTTT TACCCGACCG GATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24455543 [Map]; Strand: c
      • AT5G60790.1 - [+] show detail - ABC transporter family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT17991 - 5-prime edge 
    CCTACTTTCT CTCTGTCCAG AGTTCTCTGT TCTCATCCTC AATCTAGAGA 
    TATCCGAGTA AGTCCTCTTA TCTAGATTTC GTGATTCGAT TTGGAAATTT 
    AGATTCGTGT CCTTTGATCT GTGAATATAT GTTTGGATAA TCCTTGTTTG 
    ATTGCTCATA CTTTGTATCC TCTGTTTAAA ATATGTTGCA GATAGAATCT 
    CTGTCTGTGA CGTTTCATGG TTATGACCTT ATTGTTGATT CAATGTTGGA 
    GCTTAACTAT GGAAGGCGTT ATGGTCTCCT TGGGTTGAAT GGTTGTGGAA 
    AGTCCACTCT TTTAACTGCA ATCGGACGCA GAGAGATACC GATTCCGGAT 
    CAAATGGATA TCTACCATTT GTCTCACGAG ATTGAAGCTA CTGACATGTC 
    TTCCCTGGAG GCTGTTGTTA GCTGTGATGA GGAGAGGTTG AGGTTAGAGA 
    AAGAAGTTGA AATTCTTGTA CAGCAGGATG ATGGAGGCGG AGAGCGTCTT 
    CAATCTATCT ATGAGAGGTT AGACGCCATG GATGCAGAAA CCGCTGAGAA 
    ACGTGCTGCT GAAATTCTGT TTGGACTTGG TTTCGACAAG GAAATGCAGG 
    CGAAGAAGAC GAAAGATTTC TCTGGTGGTT GGAGGATGAG AATTGCATTG 
    GCAAGAGCAC TCTTCATTAT GCCGACAATC CTTTTGCTTG ATGAGCCGAC 
    TAATCATTTA GGTTGGTAAT C

AT5G60790.1

Model type
Protein coding
Short Description
ABC transporter family protein
Curator Summary
member of GCN subfamily
Computational Description
GENERAL CONTROL NON-REPRESSIBLE 1 (GCN1); FUNCTIONS IN: transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 3 (TAIR:AT1G64550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR