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GT17995

CSHL Arabidopsis genetrap mutant lines

Original: GT17995

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17995

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 746058 [Map]; Strand: c
      • AT2G02680.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17995 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATGATCA 
    AGGGAAGTCA GTAGAACACT TTTTCAATCT CAAGACATCC CCTTTCCATG 
    GTGACAATAC GTCAGTTGAT CATGATCCCG TACTACCTCT GTTTTGGTGC 
    AACAATAAAG AAGCTGATCC AGAGAACGAT TGCGTTATTT GCAAAGCCGA 
    AAAGGTCGGC ACAGACTATT ATTACTGTGT CGAGTGTGAT ATGAGGTACC 
    ACAAAGAATG TGTCGAGTCT CCACTTAGGA TCAATTATCC TTCCCACGCC 
    AATCATTCTT TCCAACTTTA CTCTTCCAAG AAAAGATTCA AGTATTGCAT 
    CATGTGCAGA AAAAAAGTAA ACGGTCTCGT ATATTATTGT GCTCTTTGTG 
    ACATGTATAT GCATACGCTT TGTGCCCAGG GGGGAATACC CTTTTTTCAT 
    AGACCAACCA AAAAGGCATG CCCATATCCT CACCCTTTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16061638 [Map]; Strand: c
      • AT2G38325.1 - [+] show detail - MIR390A; miRNA
        Distance: -316; Region: promoter
    Flanking Genome Sequence: GT17995 - 5-prime edge 
    CCTACTTTCT CCCTGTTTTT TAGTGTGGAA AGTATTGATA CTATATAGTC 
    CAGATGTGAT TTATTGGATC CCGTTGATTG TTTGACTTTA GTTTCTTCTT 
    CTGAGGCCTT TTGATTCACA GAAATGAAGG AAGCTTAATT CAAAATACAT 
    GATAATGCTT TTGTTGACGA ACAATTATAG ATGCATCTAT TATAATATAT 
    GCTATCATTT TAACCCGGAC TTTAATTACG TATATGTATA TATACACACA 
    TTGCATATCC TATTGTGATT TAAATAAATA TGTATTTATA TACCACATAT 
    TATTAATTAT ATACCATTGG TCCGATATTC AAAATATTCG AAGACCAATG 
    CTTTTTTTTT GTCGGCCGAA GACCAATGCT TATTTGCAAA CTATGAGACT 
    TCACAATATA TATTCGGGGA TTTGAAAGTA TAATTTTATA TTATTTTGTT 
    ACGCGGATAA AATTGATTTC TATAATTACA CTTACCCAAT ACTGAAAATT 
    TAATTAATTA AACAGAGTTA TATTTTCCCG ACCAAAATTA TATTTTTAG

AT2G02680.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: intracellular; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G02690.1); Has 1749 Blast hits to 685 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 10; Plants - 1682; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38325.1

Model type
miRNA
Short Description
MIR390A; miRNA
Curator Summary
Encodes a microRNA that targets the TAS3 family of tasiRNA-generating transcripts. Cleavage of TAS3 transcripts by miR390 initiates processing of these transcripts in a 21-nucleotide register. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AAGCUCAGGAGGGAUAGCGCC
Link
InterPro Scan - TAIR