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GT18030

CSHL Arabidopsis genetrap mutant lines

Original: GT18030

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18030

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1354763 [Map]; Strand: c
      • AT4G03060.1 - [+] show detail - AOP2 (ALKENYL HYDROXALKYL PRODUCING 2); oxidoreductase, acting on paired dono...
        Distance: -909; Region: promoter
      • AT4G03063.1 - [+] show detail
        Distance: -904; Region: promoter
    Flanking Genome Sequence: GT18030 - 5-prime edge
    TCCTACTTTC TCCCTGCTCT AATTGTCTCA TTTTATAATT TTTTTGGGCT 
    ATTCAAAAAT ATATTATAGC AAACGTACAA GTCAAAAACT TGATCGATCG
    TCTCGTATTT CTGTTATACA TTGTGATAAA AAAACTTAAC AATACAGAGA
    CGACGTGTAT GCAGGTAAAA CAAAAGCTCT GATCCAAAGT AATGGCCAAA
    TGATACAGTT GGATCCAACC GAGATAAGTA AAAAAAGATT CTATCTTTAA
    AATGGGACCT CTCTCCTTTT TCTCTTCATT ATTGCTATGG TTCAAAACGT
    ACAATCATCG GCCTCGCTCG GAATTTAAAT CATATACAAT ATGCTTACTA
    AGTATTATTC ACGTATAAGT AACAATATGC AACTAANGGT TTTGGGCCAC
    GAATTACTTA CAATAAAAAA CTTTTGTAAA CTCAAGTTCC AAATGTTTAG
    TAATATAAAT TCACATTTTA TCTCAAAAAA

AT4G03060.1

Model type
Pseudogene
Short Description
AOP2 (ALKENYL HYDROXALKYL PRODUCING 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Curator Summary
Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.
Computational Description
similar to AOP3 (2-oxoglutarate?dependent dioxygenase 3), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT4G03050.1); similar to AOP3 (2-oxoglutarate?dependent dioxygenase 3), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT4G03050.2); similar to 2-oxoglutarate-dependent dioxygenase [Arabidopsis lyrata] (GB:AAL14664.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283)
Link
InterPro Scan - TAIR

AT4G03063.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT4G03070; AOP1 (2-oxoglutarate-dependent dioxygenase 1.1);
Link
InterPro Scan - TAIR