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GT18034

CSHL Arabidopsis genetrap mutant lines

Original: GT18034

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18034

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 604088 [Map]; Strand: c
      • AT5G02670.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: poly(A) polymerase 3 (TAIR:AT3G06...
        Distance: 0; Region: intron2 (CDS)
      • AT5G02680.1 - [+] show detail - LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED...
        Distance: -830; Region: promoter
    Flanking Genome Sequence: GT18034 - 5-prime edge 
    CTTCTGCAGA GAATGAAGAA TTTTGTTTGA GCTCTATCCG TATGCAAACA 
    CATGTACACC TCTCGGCTGC TAATCAGGAA CATCTCAGTG GTTGGGTTAA 
    GTCACGTTTC CGTTGTCTTC TGTCTCATAG TCTGTGACTG TAGCCTTTGC 
    TTTGTTCCAC ATGTTATTGA AATACAGGAA GTCTATGGCA TTTTTGTGAT 
    CCAAACCCAT CAGAGCAAAG CAGCCACACA TTATTGTCTT TTACTGGGGA 
    TTACACCTCA CTGAATCTCA ACAATGGAAG CTTCCTGGGA CCAGTTGGTA 
    GAATCCAGTT ATCGGTTTTG AAAGCATCTC AGCTACCTAA GAATTGTGAG 
    TGTGCTAGCA ACAACAGAAG CAAGAAGGTG ACAAAGACCT GTTGCTTGGA 
    GATTCTGGTA AGATATCTAT GTGTTGTGGA AACTGGGAAC TAAAAGAAAC 
    CTATTACAAA GGTGACAAGA CCTGTTGGAG AATCTGAGAA GTTATCTATG 
    TGTTGTGGAA AACTG

AT5G02670.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: poly(A) polymerase 3 (TAIR:AT3G06560.1); Has 14 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02680.1

Model type
Protein coding
Computational Description
LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 252 Blast hits to 252 proteins in 89 species: Archae - 0; Bacteria - 71; Metazoa - 93; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR