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GT18038

CSHL Arabidopsis genetrap mutant lines

Original: GT18038

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18038

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 347604 [Map]; Strand: w
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18038 - 5-prime edge 
    TTTCTCCCTG ATAACCGCAT ACGACGCTCT CACGGAGAGA CAAAAAGCCC 
    CCAAAGTCCT CCTTATTAAC GATTTTGCCA TCTCTTCTTC TTCATCTCAC 
    TCGACTATCT TCAACCTCGC CGCAACTTTC CGCGACAACA TCAGATCGTT 
    CCTCCGTGAA TATGCCGAGA TTGAAGATTA CACCATCGAC GGAGCCACCG 
    TCTCTACTAT TTTCCTTGGA AGCCAAGCAA ATGGCGTCGT TTTCCCTCTT 
    TACATCATCG AACAACAAAT CTCTGATTCT TCTCCAAACC CTCTCTGCGA 
    TTTCTGTCGA TGCTTTGGTA AATAATAAAT CTTAGGTTTT GTTTTTTCGT 
    TGTTCTTGGT AAAGTTTCGA TTTTGGATCG TTTACGTGTG TGTATATATA 
    TAGGTTGGGG TCATCACTAT GTAACGAAGA GGAAGTATCA TATGATAATC 
    CCAAACCGTG ATGAATGGAA TGAGCCATTG AAGAGAGAAA GCTTGAAGCT 
    TTCTTCACAT TTGATGCATG GTTTGATTCA TTGCAATGGT TTTGGTCATT 
    TGCTTTGTAT CAACACTGAT CTTGATGATC CTAATCACCT CTCTGGTGAC 
    CAAATCATGG ACTT

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR