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GT18039

CSHL Arabidopsis genetrap mutant lines

Original: GT18039

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18039

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 347598 [Map]; Strand: w
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18039 - 5-prime edge 
    TCCTACTTTC TCCCTGATAA CCGCATACGA CGCTCTCACG GAGAGACAAA 
    AAGCCCCCAA AGTCCTCCTT ATTAACGATT TTGCCATCTC TTCTTCTTCA 
    TCATCACCAC CTTTCTTCAA CCTCGCCGCA ACTTTCCGCG ACAACATCAG 
    ATCGTTCCTC CGTGAATATG CCGAGATTGA AGATTACACC ATCGACGGAG 
    CCACCGTCTC TACTATTTTC CTTGGAAGCC AAGCAAATGG CGTCGTTTTC 
    CCTCTTTACA TCATCGAACA ACAAATCTCT GATTCTTCTC CAAACCCTCT 
    CTGCGATTTC TGTCGATGCT TTGGTAAATA ATAAATCTTA GGTTTTGTTT 
    TTTCGTTGTT CTTGGTAAAG TTTCGATTTT GGATCGTTTA CGTGTGTGTA 
    TATATATAGG TTGGGGTCAT CACTATGTAA CGAAGAGGAA GTATCATATG 
    ATAATCCCAA ACCGTGATGA ATGGAATGAG CCATTGAAGA GAGAAAGCTT 
    GAAGCTTTCT TCACATTTGA TGCATGGTTT GATTCATTGC AATGGTTTTG 
    GTCATTTGCT TTGTATCAAC ACTGATCTTG ATGATCCTAA TCACCTCTCT 
    GGTGACCAAA TCATGGACTT TTTGGGACCG TCTTTGCTCT ACT

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR