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GT18041

CSHL Arabidopsis genetrap mutant lines

Original: GT18041

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18041

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8945586 [Map]; Strand: c
      • AT1G25470.1 - [+] show detail - AP2 domain-containing transcription factor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT1G25470.2 - [+] show detail - AP2 domain-containing transcription factor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT1G25472.1 - [+] show detail - conserved peptide upstream open reading frame 54
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT18041 - 5-prime edge 
    GTTACCTAAA CCTCGAAAGG TAAAGCGTTT TGTTCATGAG ATTACTTTCC 
    TCCCTCAGGT CTCCGAGAGT TCTCAGGATC GTAGCAATGC TGTCAAAACC 
    CCTAGAAGGA AATCTACTAG GCAGTTTAAG TATCCTGTGG GAGTTAGGCC 
    GAGGCCATCA GGCAAATTTG CTGCTGAGAT TTTGAACCCA TTCACTAAAA 
    CTAAGAAATG GTTGGGTACT TATGAAACTC CTGCAGAAGC TGAGAAGGCT 
    TATGTTGACA AGAAGGTTGA GTATGATGCA CTGGCTTCTT CAGGTTCTGC 
    TGTTTCCTCA TCGGTTGTAA CAGTGACTAG CCAGTGCTTG CGTTCCCCTA 
    CTTCTGCTTC TGTTTCTTGT GTAAGTGCTG ATGATTTGTC TAAAGAAAAG 
    ACGTCTCTGA ACAAAGATGT TGCTGCGTCT GGTGATTCAA CCACCAAAGA 
    AGTGTTCACT ACTTTCGACT TTTCGGATGT GAAAATACCT GATCTGAGAT 
    TCTTAGCAGC AGAAGAGGAT TCTATGGTTT CTAATGCAAA TGGTGCAGAG 
    CTAGACTTTG ATTGTTTCCC TTACTG

AT1G25470.1

Model type
Protein coding
Short Description
AP2 domain-containing transcription factor family protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational Description
AP2 domain-containing transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pathogenesis-related genes transcriptional activator PTI6 (InterPro:IPR017392), DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G68550.2); Has 2801 Blast hits to 2801 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2796; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25470.2

Model type
Protein coding
Short Description
AP2 domain-containing transcription factor family protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational Description
AP2 domain-containing transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pathogenesis-related genes transcriptional activator PTI6 (InterPro:IPR017392), DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G68550.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25472.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 54
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF54 represents a conserved upstream opening reading frame relative to major ORF AT1G25470.1
Computational Description
conserved peptide upstream open reading frame 54 (CPuORF54); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 53 (TAIR:AT1G68552.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR