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GT18058

CSHL Arabidopsis genetrap mutant lines

Original: GT18058

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18058

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29656291 [Map]; Strand: c
      • AT1G78880.1 - [+] show detail - Ubiquitin-specific protease family C19-related protein
        Distance: -342; Region: promoter
      • AT1G78882.1 - [+] show detail - conserved peptide upstream open reading frame 56
        Distance: -342; Region: promoter
      • AT1G78890.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -286; Region: promoter
    Flanking Genome Sequence: GT18058 - 5-prime edge 
    TGTCCAAAAT CCAATCTGTG TAGTTTTTAA GCCATACTGG TGTTTAAAAG 
    AAAAAGAAAA AAATTATACA CTACTCTAGT GAGGAAGATT GAAGAATCAA 
    AGAACTCAAA AACAAGAGCC TATTCGTCTA GTGGGCCACC AGTCCACTCA 
    AGGCCGGCCT TTTAGTCACC TGAAGTTGGA CCCAACCCAT AAGTGGGGCC 
    GGAAAACACC ATATAATCCA ATAGGCAATA ACCAATTTCA CTAGTTTATT 
    AAATAAAAAT ATATTAATAT TATTAGGTGA GATATCATAA TTGATAAGAA 
    AATGCTCCAA CTTAGTAATA ATTACAATAT ACACCCTTAG TTTAACACAT 
    TGTAACAAAA CTCTCTCAAA CTTTTTACCA ATTAAATTTG GACAGAGACA 
    AAAAAAAAAA GGGGGGTCCT CCCTTTTTCT TCCCCCAGGG GGGTGCCCAA 
    AAAAAAAAAG TCCCCCCCCC TTTAAAAAAA AAAATTTGGA AAAAGAAAAA 
    AAAAAAAACC CCCCCCCCCC CCCCTGGTGG GGCCAAAAAA AATTTTGTTG 
    GGGTCCCCCA AGGCGGGAAT TGTTTGGGGG GGGGGGGGGC CTAACGGAAA 
    GGGGCCCCCC CCCTCTGGGG GGGTGCTTCC GTTTCCCCTT CAAGGGGCCC 
    CCC

AT1G78880.1

Model type
Protein coding
Short Description
Ubiquitin-specific protease family C19-related protein
Computational Description
Ubiquitin-specific protease family C19-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: Ubiquitin-specific protease family C19-related protein (TAIR:AT1G16860.1); Has 277 Blast hits to 242 proteins in 57 species: Archae - 0; Bacteria - 14; Metazoa - 37; Fungi - 44; Plants - 151; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78882.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 56
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF56 represents a conserved upstream opening reading frame relative to major ORF AT1G78880.1
Computational Description
conserved peptide upstream open reading frame 56 (CPuORF56); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78890.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR