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GT18098

CSHL Arabidopsis genetrap mutant lines

Original: GT18098

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18098

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25257090 [Map]; Strand: w
      • AT5G62940.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT18098 - 5-prime edge 
    ATTACTAATT AAGATTACTC TCGTAAATAA CCACCAATTA CGAAAGTAAA 
    ACTGGCTTAG CAAACAAACC CATAAATAAT TTGAAGTGCT TCTCTAGTCT 
    CCAACTACTA TTACTACTAC TACTAGTTGA TGACGACAAG AAAAAAGAAG 
    TTCTGATTAA CTTATCAAAC CAAGGAGTTT GTTTTAGTGG ACGTTCCATA 
    GCCATTCATC AAACCATTCC ACGACGAACC TAAACCGTTG ATATAACCAC 
    CATTGCCGTA TCCACCACCG TCGGATTTTC CTGCGCCTCC GCTACCACCA 
    CCATTGGAGT AGCATTGATC TTGCTGCCAA TCAAGCGATA ACAACTTCGG 
    ATTTGGCTTC ACATCCATTA TTGTTGCTAC CCTTTGATGA TCTTCTTGAT 
    GATTGTAATG GTGATGATCA TAATTAGATA GCATAAGTCT TTGGCATGTC 
    GATATATCCA TGAGACCACC ACCATTTCCA TTGCCTCCCG TAGAAATCCC 
    ATTAAATCCA CCATTGTTGT TGTTGTTGTT AAGACCTACA CCGTGATTCA 
    GACCCATGTG ATGATTATGA TGATGATGAT GATCTCCGTT ACTTCCATGA 
    TTAACCATGA CCAGGTTGTC ATTGTTCACT CCCATGAGAA TCAAACTTAC 
    T

AT5G62940.1

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
HCA2 induces the formation of interfascicular cambium and regulates vascular tissue development in the aerial parts of the plant. Evidence from both gain of function and dominant negative alleles.
Computational Description
HIGH CAMBIAL ACTIVITY2 (HCA2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1915 Blast hits to 1778 proteins in 135 species: Archae - 0; Bacteria - 49; Metazoa - 135; Fungi - 61; Plants - 1116; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink).
Link
InterPro Scan - TAIR