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GT18106

CSHL Arabidopsis genetrap mutant lines

Original: GT18106

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18106

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30342414 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18106 - 5-prime edge
    ATCGTCGACT CCACAACAGA CATTGGTTTG CCAGCGAAGC ACAGATCTGA 
    CTCTGGCTCA GCGCGTTTCT TTTGTTTGTT TCTCGCTGCC ATTTTCGCAG
    AGAAGACGAG CAAGTAAAAG ATGAAGCGTT GCAGAGACGA GGTCTATATG
    TACTAGTCGT GACTAGTGGA GCAAATATAT TAATGTTAAA TTTTACGAAA
    TAAAATCAAT TCCAAATTAT GGAGAAAGAT AAAAAAAGCG TTGTGGAGTG
    TAACAAACGA TTAATGAGAA AACTTTAGGA AATAAAATCA ATTTTTCGAA
    TTATGGAGAA ATTAAAGAGG AAATAAAATT AATTTCCAAG TTTTGGATAT
    CTTTTGGAGT GAGCGGGAGA A

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR