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GT18113

CSHL Arabidopsis genetrap mutant lines

Original: GT18113

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18113

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19015540 [Map]; Strand: w
      • AT5G46870.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT18113 - 5-prime edge 
    TTCATCCTAC TTTCTCCCTG TCGGCAAGTA CTCCTTCATA TCCGATTAAT 
    CGTTCTCGTC TCGTATTTGT AGAATTTCGA TCACCAGCTG CGATTAGATA 
    TGTTGAAATT GGCGTTTAGA ATCACTAATT TTGGGTTTTA CCTTCTTATG 
    GATTACTTGT TTGATAAATG TGATTAGTAT TTATCTAATT AGTTAAAACT 
    TTGTGAATTT ATTTTTGGAC ACAGCTTCTT ATATGTATAA CTTTTAAGTT 
    AATCAGAACT TAACCAATTC GTTAACTTTA GGAGTAAGGG GTTTAACACT 
    TTTGTGCTCT CTGTTT

AT5G46870.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 416 Blast hits to 410 proteins in 105 species: Archae - 0; Bacteria - 15; Metazoa - 8; Fungi - 115; Plants - 241; Viruses - 7; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR