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GT18135

CSHL Arabidopsis genetrap mutant lines

Original: GT18135

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18135

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20782641 [Map]; Strand: w
      • AT3G55990.1 - [+] show detail - Plant protein of unknown function (DUF828)
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT18135 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATT 
    TAGGATTGGT GTCGTCTCTA ATGCACACTT GATCCCATCT GGATTCTCCC 
    AATCCAAGCT CCTATACAAT ATAACAACAA AAATTACAAA ATATATTTTG 
    TTAGTTAAGA TAAACACATA CAATTAAAAG TCTAATATGT GGGTGGTTCA 
    CCAACTCGTT AAAATGAAAT ACTATTTAGA GTTTTTATGT TTTTAGCTGA 
    TTTTTGTATA CTGTGTGGAT TTTTCAAAGG ACAACGACTT GTTATCTCTT 
    TTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 168300 [Map]; Strand: w
      • AT2G01360.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18135 - 5-prime edge 
    TCCATCCTAC TTTCTCCCTG GGTGTTTATA TCTCAGCAGG GAGTCCAGAG 
    AAAGCAATGA AGATATTAGG AGAGATGAGA GAGCGAGAGA TAATGCCTTC 
    GCTTGGGACA TACGATGTTC TATTGTCTGG TCTTGAGAAA ACCAGTGATT 
    TCCAGAGAGA AACATCGTCA TTGAGGAAGG AGCAGAAGAG TCTTGTTGCT 
    TCTACACGTT TCCGGGAAAT TGTTCATGTT GAAGACAAAA TATGCATGTG 
    ATCTTCTGTT TGCTTGCAGA GATAGACAAA ATCTGTTGCT TCTGTTTGAT 
    TACCAAATAT GTGATCTCAG AAACATTGGT GCTTGTTGAC CC

AT2G01360.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G01390.1); Has 425 Blast hits to 414 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55990.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF828)
Curator Summary
Encodes ESK1 (Eskimo1). A member of a large gene family of DUF231 domain proteins whose members encode a total of 45 proteins of unknown function. ESK1 functions as a negative regulator of cold acclimation. Mutations in the ESK1 gene provides strong freezing tolerance. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
ESKIMO 1 (ESK1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to freezing, positive regulation of transcription, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 28 (TAIR:AT2G40150.1); Has 1336 Blast hits to 1309 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1334; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR