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GT18136

CSHL Arabidopsis genetrap mutant lines

Original: GT18136

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18136

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 626376 [Map]; Strand: w
      • AT4G01470.1 - [+] show detail - tonoplast intrinsic protein 1;3
        Distance: -526; Region: promoter
      • AT4G01480.1 - [+] show detail - pyrophosphorylase 5
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT18136 - 5-prime edge 
    CACTTTCTCC CTGAAATTGT TAGTGTTTAG CTGAATTATG TAGATTTTGT 
    TAACTTCGAT CTTGAAGATG ATTGATGTTT ATCGTACTAG TAGAATCTGA 
    TGTTAAATCT TTGAGTGATG GATCGTGTTA TCAGCATCAA TAGTGAAAAG 
    ATTCTATATT GATTTAGACG TGAAGTCATG AAAATTGACT AACAAGATTC 
    TAACGTTTGG TTCTGTTTTG CT

AT4G01470.1

Model type
Protein coding
Short Description
tonoplast intrinsic protein 1;3
Curator Summary
Encodes AtTIP1;3, functions as water and urea channels in pollen.
Computational Description
tonoplast intrinsic protein 1;3 (TIP1;3); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10761 Blast hits to 10728 proteins in 2135 species: Archae - 83; Bacteria - 5069; Metazoa - 1488; Fungi - 435; Plants - 2488; Viruses - 0; Other Eukaryotes - 1198 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01480.1

Model type
Protein coding
Short Description
pyrophosphorylase 5
Curator Summary
Encodes a protein that might have inorganic pyrophosphatase activity.
Computational Description
pyrophosphorylase 5 (PPa5); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: pyrophosphorylase 1 (TAIR:AT1G01050.1); Has 5969 Blast hits to 5969 proteins in 1836 species: Archae - 171; Bacteria - 4299; Metazoa - 244; Fungi - 260; Plants - 269; Viruses - 0; Other Eukaryotes - 726 (source: NCBI BLink).
Link
InterPro Scan - TAIR