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GT18137

CSHL Arabidopsis genetrap mutant lines

Original: GT18137

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18137

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23904386 [Map]; Strand: c
      • AT5G59240.1 - [+] show detail - Ribosomal protein S8e family protein
        Distance: -653; Region: promoter
      • AT5G59250.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT18137 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATTC 
    CTTATGAATG GATTTGGATA GCATGTGTAA TGATCTTGCC TAATGACTTA 
    ATCTCTTAGC AATGCCTTAT GTATCATCAA TTATAGAAGA TAGAAAATTA 
    GTTATTTGCC TAGATTGCAC TGATTTAATA GTAATTTACT TGAATCGTAG 
    GTTTATCTTC CCGGCTTTGG GAGGATTATT GTTTGGGTAT GACATTGGGG 
    CTACCTCCGG TGCTACGCTC TCACTTCAGG TTATTTTAAA GTATCTATTT 
    TCATCTAGTT ACATTTTAGC TTTCAGAATT TTAACATTAT GTACTGTCTC 
    ATATGGTCTT GAACAGTCAC CTGCGCTTAG CGGAACTACA TGGTTTAACT 
    TCTCACCTGT TCAGCTAGGA CTTGTGGTAT GTTATTTGGA GATCGATATT 
    TTCTGTAGTT AAGCCATAGA GTTAGCAGAA AATGATAGTT TTTACTGCAT 
    TTTGTTGTGT AGGTTAGCGG ATCCTTGTAT GGAGCCCTTC TTGGCTCAAT 
    TTCTGTCTAT GGCGTTGCTG ATTTCCTTGG TAAGTCTTGT TC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16737163 [Map]; Strand: w
      • AT2G40085.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT18137 - 5-prime edge 
    GTTTTCTTCC CTAAATGGAG GTGACACGAA ACACAGAGCG AAATGATAGA 
    GACGAAGAAC GATAGAGACT TTACCGGAGA AAATGTCCTT ATTGATCGCA 
    GGGGAGATTA TAGAGCGGTG GAGACAGAAG GAGTCGCGGC TGCGTAGAAG 
    AGACAGACAG ACAGACTCGA GTGTTGAAAA GACAGAACAG AGAATAAGAT 
    CTTGGTCGCT GCATAATTCA GGTTTCTCAA TTTAACCAAA CCCAAAACCG 
    AACCAAACCG AACCATCTCG GTTCAATTTG ATTCAGATGT CAACACCTGT 
    TTACATAAGG TTCTCATAAA TGATGAAAAA AAATGAGT

AT2G40085.1

Model type
Protein coding
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59240.1

Model type
Protein coding
Short Description
Ribosomal protein S8e family protein
Computational Description
Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59250.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G17010.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR