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GT18175

CSHL Arabidopsis genetrap mutant lines

Original: GT18175

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18175

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21871787 [Map]; Strand: w
      • AT5G53870.1 - [+] show detail - early nodulin-like protein 1
        Distance: -503; Region: promoter
    Flanking Genome Sequence: GT18175 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TACTTACAAG TTACAATAAG GAAGTAATAG CTAGCACCTA GCTGGCTAGT 
    TTAGAATTCA GAAACAACAA TCCGAAAGTA GAATCATATA AAGAGCTAAT 
    CACTACTATA CAAGTAGACT CAATAGCTTT CATATAAATG AAATCAAACT 
    AAAAATGGAA AACCAGCCCA TTTTGTCAAT AGTTTTAACA AATTTAAATC 
    ATCATTAACA AAAATACTAA TAATTAAATA GATAAATCCA TTAATCAAAT 
    CAATTTTTAT GGGAAGTGAA TTAATACGTG AGTCAAATCT CACACGTCTT 
    CTTAACATAA ATGCCTTCAA TTTTATTTCA CAACTTTCAA AATTATTATT 
    ACCTTACCAA AAAAAATCTC TTTGATATAA AGAAAGAAAG TCTTCTGTCA 
    CTAATCTTCG TATTCCATTT TTGTAAATTT CAGAGATTTT CTTTGATTCT 
    TCGTAATCTC ATAAGTTCCT ATATATTCAT TACATAACTT TACTCATTCC 
    ACAACACAAA CACAAAAGAC AAAACACAAA AACCCTAATT TTCAGATCTC 
    CGAAAACCAT GTGGGCGATC ATGAAAAGTC TCTGTTTCTC CTTCCTTATC 
    CTCGCTTCAT TTGCAACTTT CTTCTCCGTT GCTGATGCAT GGAGGTTTAA 
    CGTCGGAGGT AACGGCGCTT GGGTCACAAA TCCTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21962371 [Map]; Strand: c
      • AT5G54130.2 - [+] show detail - Calcium-binding endonuclease/exonuclease/phosphatase family
        Distance: -229; Region: promoter
      • AT5G54130.3 - [+] show detail - Calcium-binding endonuclease/exonuclease/phosphatase family
        Distance: -229; Region: promoter
      • AT5G54130.4 - [+] show detail - Calcium-binding endonuclease/exonuclease/phosphatase family
        Distance: -229; Region: promoter
    Flanking Genome Sequence: GT18175 - 5-prime edge 
    TCCTTTCGGC CATCTCTTCA TGAAATTGAG ATACGATTTG TTGTAATAGT 
    AAAGTTTTTA TTTTAGTTTA TTGTTATCTT TTTGTGAAAA GGAAAAAACA 
    ATGCATGGAC ATAATTATGC GTTGTAGACG TTGTTGTCGA GATCTTTGTT 
    TAAGTAATTT GTTTTGATTG ATGACGGTTT TTTTGTGCCG GTTTATATAG 
    TTGAAGTTTT CGGATTAAAA ACAGTTTCTT TGTTATAGGA TTAAAGAAGT 
    TGCAACAGAT TAGTGACGGG TTAAGAGACA GTGACACAGT CACTAAGCTT 
    TTCATTTGTT AGTCTTATTT TCTTCTTCTT AAATTGTGTT AAGACGAGTA 
    TTGAACACTT ATGTTCCATA ATGAAATGAA ATGATATATT GTATATATGC 
    TTTGCAAATA ATGGAAAACT ACCTTAAACG GTAGTTTTTC TCTTTTTTCT 
    AATATTGTTT TACCAATTTA TTAACCATAT GTTGATTATT CTTAAACTAA 
    TCATTTTATG AATTATGATG CATGTACGTG TTTTACAAGT CTTAGCTTAA 
    TGATCTAGTT ACGTTT

AT5G53870.1

Model type
Protein coding
Short Description
early nodulin-like protein 1
Computational Description
early nodulin-like protein 1 (ENODL1); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: early nodulin-like protein 2 (TAIR:AT4G27520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54130.2

Model type
Protein coding
Short Description
Calcium-binding endonuclease/exonuclease/phosphatase family
Computational Description
Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 395 Blast hits to 395 proteins in 101 species: Archae - 0; Bacteria - 4; Metazoa - 160; Fungi - 17; Plants - 147; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54130.3

Model type
Protein coding
Short Description
Calcium-binding endonuclease/exonuclease/phosphatase family
Computational Description
Calcium-binding endonuclease/exonuclease/phosphatase family; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54130.4

Model type
Protein coding
Short Description
Calcium-binding endonuclease/exonuclease/phosphatase family
Computational Description
Calcium-binding endonuclease/exonuclease/phosphatase family; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR