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GT18186

CSHL Arabidopsis genetrap mutant lines

Original: GT18186

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18186

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18186 - 3-prime edge 
    TTGATCCTGT TTCTACTAGG TTAATTAAGT GCTTCTTCAT CTCTCTCG

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18186 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATCCTTG ATCCTGTTTC 
    TACTAGATTA ATTAAGTGCT TCTTCATCTC TCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5236509 [Map]; Strand: c
      • AT1G15210.1 - [+] show detail - pleiotropic drug resistance 7
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18186 - 5-prime edge 
    TCTAAAGATG GATTACGATC CAGCTCATGC TATGAGCAGA GGTGGGAGTA 
    TGCGGCAAAC CATAAGTCGT AGTGTAAGCA AAGCAAGCAG AAACATGGAA 
    GACATATTCA ATACAAGCTC CAGACGAACC AAATCTGTCA ACGAAGACGA 
    AGAAGCTCTC AAATGGGCTT CCATCGAGAA ACTCCCTACC TACAACCGTC 
    TCCGCACAAG TCTCATGCCC GAATTAGGCG AAGATGACGT CTACGGTAAT 
    CAAATCCTCA ACAAAGCAGT TGACGTCACA AAGCTCGACG GTGAAGAACG 
    TCAGAAGTTC ATCGACATGG TCTTCAAAGT CGCAGAGCAG GACAACGAAC 
    GGATCTTGAC CAAGCTAAGA AACAGAATCG ACAGAGTTGG GATCCAAC

AT1G15210.1

Model type
Protein coding
Short Description
pleiotropic drug resistance 7
Computational Description
pleiotropic drug resistance 7 (PDR7); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT1G59870.1); Has 383488 Blast hits to 290790 proteins in 4017 species: Archae - 7218; Bacteria - 309544; Metazoa - 9443; Fungi - 7090; Plants - 6323; Viruses - 4; Other Eukaryotes - 43866 (source: NCBI BLink).
Link
InterPro Scan - TAIR