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GT18203

CSHL Arabidopsis genetrap mutant lines

Original: GT18203

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18203

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27074806 [Map]; Strand: c
      • AT1G71920.2 - [+] show detail - HISTIDINE BIOSYNTHESIS 6B
        Distance: 5640; Region: intergenic
      • AT1G71930.1 - [+] show detail - vascular related NAC-domain protein 7
        Distance: -1334; Region: intergenic
    Flanking Genome Sequence: GT18203 - 3-prime edge 
    GACTAATATC ATCATTTTGC ACCCACATGT CACACACTTA CCATATATAT 
    ATAATTAAGC ATACTCGCAT AAACCTATAT ATACAGTCTA AGATTTCTAG 
    CTGGTCCATA TGCATGTGAT CTAATCAAAA GCCAAACTCT CCTTGTCTTT 
    GCTATATTAA CAATCATTTG ATCCACACCA GCAGAGATTT CAATCTTCCT 
    CTCCTTCTTC CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27074601 [Map]; Strand: c
      • AT1G71920.2 - [+] show detail - HISTIDINE BIOSYNTHESIS 6B
        Distance: 5435; Region: intergenic
      • AT1G71930.1 - [+] show detail - vascular related NAC-domain protein 7
        Distance: -1539; Region: intergenic
    Flanking Genome Sequence: GT18203 - 5-prime edge 
    CTCTCTCTCT CTCTCTATTA CCGCAATTTT TTGTTTAAAG TTTTTCCAAT 
    CTTCTCCACT TTAGTGGGAG TTACTGCACA AGCCAAACCT TTTGTCTATT 
    TCTCATTAGT TATCACAACA CACAAGACAA ATCCTTTAGA TTAACGGTTT 
    TTATGTGGCG TAATTAGGTC AAATGGATGT TCCGAATATA CCCAAAAACT 
    TTCAGTTTG

AT1G71920.2

Model type
Protein coding
Short Description
HISTIDINE BIOSYNTHESIS 6B
Curator Summary
Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.
Computational Description
HISTIDINE BIOSYNTHESIS 6B (HISN6B); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: histidinol phosphate aminotransferase 1 (TAIR:AT5G10330.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G71930.1

Model type
Protein coding
Short Description
vascular related NAC-domain protein 7
Curator Summary
Encodes a NAC-domain transcription factor with transcriptional activation activity that is involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.
Computational Description
vascular related NAC-domain protein 7 (VND7); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: vascular related NAC-domain protein 1 (TAIR:AT2G18060.1); Has 3020 Blast hits to 3015 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3006; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR