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GT18241

CSHL Arabidopsis genetrap mutant lines

Original: GT18241

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18241

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23452897 [Map]; Strand: w
      • AT3G63520.1 - [+] show detail - carotenoid cleavage dioxygenase 1
        Distance: -14; Region: promoter
    Flanking Genome Sequence: GT18241 - 3-prime edge
    GTAGAGTATT TACCGACCGT TACCGACCGT TTTCATCCCT ATACACACAT 
    TCTACCCGAC CGGATCGTAT CGGTATATTC ATATCACTCG ACAAACGGNA
    TGTTTTTTCT TGAGATGATG GACCCAGTTA TATTTCCGGC CCAAATAAAA
    AGAATAACAA AAAAGCCCAT ACACGAGCCC AAGACTAACA ACCACTTGAA
    GTAAGCCCCG TTCAATTTAC AATTTTAATC GACAGAGACA ATCACAAACA
    CAGATTACAA ACGACAACTA AGCGCATAAG ATGATTTCTT CTCCAGCTTC
    GTATGGGGGG GGCAATACAT TGTGCACATC TGCGAACACA TCTTCGTCTC
    CGCTCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23452957 [Map]; Strand: w
      • AT3G63520.1 - [+] show detail - carotenoid cleavage dioxygenase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18241 - 5-prime edge
    CCTACTTTCT CCCTGGTCTC AAATCACCTC CTCCTTGCAG CAAAACAAAC 
    AATCATGGCG GAGAAACTCA GTGATGGCAG CATCATCATC TCAGTCCATC
    CTAGACCCTC CAAGGGTTTC TCCTCGAAGC TTCTCGATCT TCTCGAGAGA
    CTTGTTGTCA AGCTCATGCA CGATGCTTCT CTCCCTCTCC ACTACCTCTC
    AGGCAACTTC GCTCCCATCC GTGATGAAAC TCCTCCCGTC AAGGATCTCC
    CCGTCCATGG ATTTCTTCCC GTGAAATTCT CTCATATTCT CTTTGATCCT
    TTCCCCTAAG GGTTATTTAG TATTCTTATG ATCGTCTCTT TTGTCTCGCA
    GGAATGCTTG AATGGTGAAT TTGTGAGGGT TGGTCCAAAC CCCAAGTTTG
    ATGCTGTCGC TGGATATCAC TGGCACGTTC TCTTCTTCTT CTTCCATTTT
    TACAGTATTC AATTAT

AT3G63520.1

Model type
Protein coding
Short Description
carotenoid cleavage dioxygenase 1
Curator Summary
Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds.
Computational Description
carotenoid cleavage dioxygenase 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, carotene catabolic process, xanthophyll catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 4 (TAIR:AT4G19170.1); Has 2926 Blast hits to 2896 proteins in 500 species: Archae - 16; Bacteria - 808; Metazoa - 317; Fungi - 194; Plants - 866; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR