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GT18258

CSHL Arabidopsis genetrap mutant lines

Original: GT18258

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18258

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28981489 [Map]; Strand: c
      • AT1G77130.1 - [+] show detail - plant glycogenin-like starch initiation protein 2
        Distance: -144; Region: promoter
      • AT1G77131.1 - [+] show detail
        Distance: 0; Region: exon2 (NonCoding)
    Flanking Genome Sequence: GT18258 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATACACA 
    CATACTGCTT TACCCGATGG AGTGCAAGAA TCTTCATCTA CCGCGGAGAT 
    GGTCTGAGTC TCACCCCAAT GCCAAAGCAT ACTCTCCCAG AAACAGAAAT 
    CTTCAAAACA AGTCGTAAGT CTCTTATCTT TGATCTTAAT CCTCCAATGT 
    CCGTCTCTGT AATTCGCTTT CTCAGCTTGT CTCCGATCCC ACTCAAGTTG 
    CGCCTTTTGT TTCGAACTCA GTAGACAAAA CCTCTGCAAT TTCTTAGGCA 
    TCGCGTCGTG CACTCTCCAC CAAGTTTTGT GTGCTTC

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18258 - 5-prime edge 
    CCATCCTACT TTCTCCCTGC TACTGT

AT1G77130.1

Model type
Protein coding
Short Description
plant glycogenin-like starch initiation protein 2
Computational Description
plant glycogenin-like starch initiation protein 2 (PGSIP2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 1 (TAIR:AT3G18660.3); Has 1471 Blast hits to 1463 proteins in 343 species: Archae - 0; Bacteria - 240; Metazoa - 259; Fungi - 287; Plants - 508; Viruses - 75; Other Eukaryotes - 102 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G77131.1

Model type
Pseudogene
Curator Summary
pseudogene of PGSIP, glycogenin glucosyltransferase
Link
InterPro Scan - TAIR