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GT18260

CSHL Arabidopsis genetrap mutant lines

Original: GT18260

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18260

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10832034 [Map]; Strand: w
      • AT4G19985.1 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G19990.2 - [+] show detail - FAR1-related sequence 1
        Distance: -269; Region: promoter
      • AT4G19990.1 - [+] show detail - FAR1-related sequence 1
        Distance: -814; Region: promoter
    Flanking Genome Sequence: GT18260 - 5-prime edge 
    CCTACTTTCT CCCTGACATA AGCGTAAATC TCTATGAATT ATCTGATTAA 
    TGATAAAAAT ATGAAACCTG GGGAAAGTTC TGTCAAATTT CTCGAAGAAA 
    ATCAACCATT TTTGCTTCTA AACTCACGAT TTTTCCATCA GCAGAGGTGA 
    AGAAGAAGAA CACCAAAAAA ATGTGTGGCT CAAGATTTGC TCGTGCAGGA 
    AAAATTATCC GGTTCTCGAC GAAATGAATC CGGTTATCAA AAATATAAAC 
    AGGTTTAAGT AAACGAGAAC CGGAGTAAGA GGTGAGAGAA GAGGAAACCA 
    ACATAACCGC GAGTATAAAA AAGGCGAGTA CGACGGTGAC GACGAAGACT 
    CTTTACCCTA AGATCTGATT CTGTACTCGC TTCCGGTCGT TACTCT

AT4G19985.1

Model type
Protein coding
Short Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Computational Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: N-terminal protein myristoylation, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: nuclear shuttle interacting (TAIR:AT1G32070.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19990.1

Model type
Protein coding
Short Description
FAR1-related sequence 1
Computational Description
FAR1-related sequence 1 (FRS1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3 (TAIR:AT3G22170.2); Has 1641 Blast hits to 1185 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 8; Plants - 1612; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19990.2

Model type
Protein coding
Short Description
FAR1-related sequence 1
Computational Description
FAR1-related sequence 1 (FRS1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS (FAR1 Related Sequences) transcription factor family (TAIR:AT4G15090.1).
Link
InterPro Scan - TAIR