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GT18295

CSHL Arabidopsis genetrap mutant lines

Original: GT18295

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18295

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 173450 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01400.1 - [+] show detail - unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; B...
        Distance: -821; Region: promoter
    Flanking Genome Sequence: GT18295 - 5-prime edge 
    CCTACTTTCT CCCTGCTCCG TGACATTGAT GAGACTCAAC AGCGGAAGTT 
    GATGACACTA AGAATTCAGA TGATAGTAGA GTTATCAGCT CCGTTCTCTT 
    GATGAAGCAG AATCTGGTTG CAGTTGACAT TTTACTTNCC AGATGAGAGA 
    TAGGAACTAA AGCTGGATTC TTTTGTTGTT TCAGCATCAT AGAAACAACT 
    GTGACCGTTG TAGAACAGAG GGGGCTTCGT GGGCTTTGAT ACAGCTTGGA 
    AT

AT2G01390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01400.1

Model type
Protein coding
Computational Description
unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR