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GT18299

CSHL Arabidopsis genetrap mutant lines

Original: GT18299

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18299

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24734173 [Map]; Strand: c
      • AT1G66340.1 - [+] show detail - Signal transduction histidine kinase, hybrid-type, ethylene sensor
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT18299 - 3-prime edge
    AGAAATGACG TCAAAAAAAA AAGTAAGACC GAAGAAGAAG TGTTAAACCC 
    AACCAATTTT GACTGGATAA AAAGCTTCAA CGCTCCTTTT CTCCTTCTCG
    GTCGCTCTCC GCCGGGTCCC AAATCCCCAA TTCCTCCTCT TCTCCGATCA
    ATTCTTCCCA AGAAAGCTTC TTCTTCCTCG ATTCTCTCCT CAGATGGTTC
    CGGGACTTCT TTATATATAT TCTTCACTTC CACAGTTTTC TTCGGT
  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18299 - 5-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTATATACAC ATTCCACCCG 
    ACCGGATCGA ATCGGTTTTC GATTACCGTA TTTATACCGT TCGTTTTCGT
    TGCCGGTATA TCCCGTTTTC GTTTCCGTCC CGCAAGTTAA ATATGAAAAT
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA
    TAAACACGTT CCACCCGACG GGATCGAATC GGTT

AT1G66340.1

Model type
Protein coding
Short Description
Signal transduction histidine kinase, hybrid-type, ethylene sensor
Curator Summary
Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.
Computational Description
ETHYLENE RESPONSE 1 (ETR1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: ethylene response sensor 1 (TAIR:AT2G40940.1); Has 102721 Blast hits to 98263 proteins in 3046 species: Archae - 757; Bacteria - 90102; Metazoa - 18; Fungi - 1611; Plants - 2314; Viruses - 21; Other Eukaryotes - 7898 (source: NCBI BLink).
Link
InterPro Scan - TAIR