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GT18302

CSHL Arabidopsis genetrap mutant lines

Original: GT18302

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18302

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23453051 [Map]; Strand: c
      • AT3G63520.1 - [+] show detail - carotenoid cleavage dioxygenase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18302 - 3-prime edge
    GACGTTACCG ACCGTTTTCA TCCCTATACA CACATTCTAC CCGACCGGAT 
    CGTATCGGTA TATCTATCTC ACTCGACAAT ACCTCTCAGG CAACTTCGCT
    CCCATCCGTG ATGAAACTCC TCCCGTCAAG GATCTCCCCG TCCATGGATT
    TCTTCCCGTG AAATTCTCTC ATATTCTCTT TGATCCTTTC CCCTAAGGGT
    TATTTAGTAT TCTTATGATC GTCTCTTTTG TCTCGCAGGA ATGCTTGAAT
    GGTGAATTTG TGAGGGTTGG TCCAAACCCC AAGTTTGATG CTGTCGCTGG
    ATATCACTGG CACGTTCTCT TCTTCTTCTT CCATTTTTAC AGTATTCAAT
    TATTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23452977 [Map]; Strand: c
      • AT3G63520.1 - [+] show detail - carotenoid cleavage dioxygenase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18302 - 5-prime edge
    TCCTACTTTA TCCCTGCTCG AGAAGATCGA GAAGCTTCGA GGAGAAACCC 
    TTGGAGGGTC TAGGATGGAC TGAGATGATG ATGCTGCCAT CACTGAGTTT
    CTCCGCCATG ATTGTTTGTT TTGCTGCAAG GAGGAGGTGA TTTGAGACCA
    GATAATATGG CCCGCGTCTT GGCGGAAACG CTGCCACGTC GCAACGGAAT
    CTTTTTTCTT GAGATGATGG ACCCAGTTAT ATTTCCGGCC CAAACAAAAA
    GAATAACAAA AAAGCCCATA CACGAGCCCA AGACTAACAA CCACTTGAAG
    TAAGCCCCGT TCAATTTACA ATTTTAATCG ACAGAGACAA TCACAAACAC
    AGATTACAAA CGACAACTAA GCGCATAAGA TGATTTCTTC TCCAGCTTCG
    TATGGTGGGG GCAATACATT GTGCACATCT GCGAACACAT CTTCGTCTCC
    GCTCTCTGGA CTCCCAGATA TGGGTGAATC TAAGACACAG TCCGGGATCG
    CCCTCAAGCT TTCTTCCAGC AACGATCCAA CACTCTGCAA TACATAATTC
    AACCACTCAA CACCAGTTAC AAACTTTCTA ACGTGTTACC ACCAATATAT
    CACACACCCT GCACTCCTTG AAAGCTGCGT CTGCTCTCCG CTTCCACAAG
    CTATTTCCAT TTTCTGAATG GAAAAGGTTT AGCAGAGGCT GCAATCAATT
    GA

AT3G63520.1

Model type
Protein coding
Short Description
carotenoid cleavage dioxygenase 1
Curator Summary
Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds.
Computational Description
carotenoid cleavage dioxygenase 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, carotene catabolic process, xanthophyll catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 4 (TAIR:AT4G19170.1); Has 2926 Blast hits to 2896 proteins in 500 species: Archae - 16; Bacteria - 808; Metazoa - 317; Fungi - 194; Plants - 866; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR