1. Home
  2. Mutant Lines
  3. GT18314

GT18314

CSHL Arabidopsis genetrap mutant lines

Original: GT18314

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18314

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19099740 [Map]; Strand: w
      • AT5G47040.1 - [+] show detail - lon protease 2
        Distance: -1025; Region: intergenic
      • AT5G47050.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
        Distance: -6600; Region: intergenic
    Flanking Genome Sequence: GT18314 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATGAATAC 
    CTTATGGCCG TACCTGAGCG ATATCACAAT TACACTTTTA CTCCCCAACT
    TCCACCTTAT CTTTATCTGA CACGTGGCAT TATTACAAGC ATGGGTCCCA
    AGAACTCTCG GTCTTCTTCT TATGTTTTGT CTACCTGATG CCACTCGTTT
    TTGTCTTTCC CATCTTATCC GATCGATCCA ACGGCTATAA ATGAATTCAT
    CATTGGGAA

AT5G47040.1

Model type
Protein coding
Short Description
lon protease 2
Curator Summary
Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.
Computational Description
lon protease 2 (LON2); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein import into peroxisome matrix, docking, growth, lateral root development; LOCATED IN: organelle lumen, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Regulator of G protein signalling superfamily (InterPro:IPR016137), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: lon protease 1 (TAIR:AT5G26860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G47050.1

Model type
Protein coding
Short Description
SBP (S-ribonuclease binding protein) family protein
Computational Description
SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT4G17680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR