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GT18326

CSHL Arabidopsis genetrap mutant lines

Original: GT18326

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18326

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 212011 [Map]; Strand: c
      • AT5G01540.1 - [+] show detail - lectin receptor kinase a4.1
        Distance: 0; Region: exon1 (CDS)
      • AT5G01542.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT18326 - 3-prime edge
    AGAGGTATTT CACCGACCGT TACCGACCGT TTTCATCCCT ATACACACAT 
    TCTACCCGAC CGGATCGTAT CGGTATATCA TCTCACTCGA CCACTTGGAG
    GTTCACCAGA TTCTTATGCC TTAGTTTCCC CAAACTCTCG ATCTCTGCGA
    CAAATTCTCG AACACCTTGC CTGCTACTTG GAATTATCTT CTTCACTGCC
    ATGGAATCCG AATTCGGCAG TTTTCCTTTG AAAACGGTTC CAAATCCTCC
    GGTTCCGATG ATTCCAGTCT TTTTGAATCC ATCCGTGGCT ACGTAGAGGT
    CTCTGTATCT CAATCTGCGA GGATGATCGA TTTCCCAGTC TTCAAGAGTC
    TCTTCTTGTC CCAGTCTCTT CTTGTACATG ACGAAGAAGA AGAGTAACAC
    AAGCATGACC AGCATTACTG CCGATAACGC CACGATCATA ACAATGACTT
    GAGAATTTAA ACCTTCCTTC TTCGCCTTAT TCGGCGGCGG CGGAGGAAGC
    TCCGAGAGGT TTAGAACATC CGCAATTGGA CGTTCTCCGC CGCTTGAGAA
    ACTCCAACCC ATCACGTAAT GAGCACTTGA CTGACCTTTC CCCGTCGATG
    CCGTGAATCC GACGTACATT TCTTCTTGCA CAATCTCCAA CAGTTTTGGA
    ACATGTTGAG AGATCAAAGG CTTTGTGGGT TTAAACCCTA ATCTCGCGGG
    ATAAACGGTG ACGTTTAGCA TTTGTGTTGC TCCATCATAC TCCAAAAGGG
    CTTGAATAGG ATTGCCACTC TCAAGCTGGA AATCTTCTTT TTTG
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 211950 [Map]; Strand: c
      • AT5G01540.1 - [+] show detail - lectin receptor kinase a4.1
        Distance: 0; Region: exon1 (CDS)
      • AT5G01542.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT18326 - 5-prime edge
    TCCTACTTTA TCCCTGTCCC CACGGAAGCT TAGACTCTCT GCTCTACACT 
    GTACCGAGAA GAAGCGGCGC CGTTTTGTCG TGGAACGCTC GTTTTCAGAT
    CGCTAAAGGA ATCGCGTCTG GTTTATTGTA TCTTCACGAA GAATGGGAGA
    AGATTGTGAT TCATAGAGAC GTGAAACCTA GCAATGTCTT GATTGATTCA
    AAGATGAACC CTAGATTGGG AGATTTTGGA CTCGCGAGGC TTTACGAACG
    CGGAACGCTA TCGGAAACAA CAGCACTCGT TGGAACCATC GGGTACATGG
    CGCCAGAGCT TTCCCGCAAC GGAAACCCCT CATCTGCGTC TGATGTTTTC
    GCGTTTGGCG TTTTGTTGTT AGAGATCGTT TGCGGGAGAA AACCAACGGA
    TTCCGGTACC T

AT5G01540.1

Model type
Protein coding
Short Description
lectin receptor kinase a4.1
Curator Summary
Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.
Computational Description
lectin receptor kinase a4.1 (LECRKA4.1); FUNCTIONS IN: kinase activity; INVOLVED IN: N-terminal protein myristoylation, abscisic acid mediated signaling pathway, response to abscisic acid stimulus, seed germination; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin receptor kinase a4.1 (TAIR:AT5G01550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01542.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01540
Link
InterPro Scan - TAIR