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GT18329

CSHL Arabidopsis genetrap mutant lines

Original: GT18329

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18329

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18329 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATTCC CCTTATTATA ACATTCTACC 
    CGACCGGATC GAATCGGTAT ACGATTACCG TATTTATTAC CGTTCGTTTT 
    CGTTACCGGT GTATCCCGTT TTCGTTCCCG TCCCGCAAGT TAAATATGAA 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTATATACAC ATTCCACCCG ACCGGATCGA ATCGGTTTTC ATANCCCGCT 
    ATTAATACCG TTCGTTTTCG TTACCGGTGT ATCCCGTTTT CGTTCCCGTC 
    CCGCAAGTTA AATATGAAAA TGAAAACGGT AGAGGTATTT TACCGACCGT 
    TACCGACCGT TTTCATCCCT ATACACACAT TCCACCCGAC CGGATCGAAT 
    CGGTTTATTA TACCCGCACT ACTACCGTTC GTTTTCGTTA CCGGTGTATC 
    CCGTTTTCGT TCCCGTCCCG CAAGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3517933 [Map]; Strand: c
      • AT5G11070.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -938; Region: promoter
      • AT5G11080.2 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: exon10 (CDS)
      • AT5G11080.1 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: GT18329 - 5-prime edge 
    TTTGCGTTTA TGTGTATGTC TACGACTACA ATATAACACT TATCCTTTTG 
    TATGTATCTC AGGATGATGT TGGTCGTGCA GTGTTCATAT CCCCAACAGG 
    TCAAAATCGG TTACAGGTTT GTTCTGTCTC TTTCTTCATC ACCAATTTAT 
    GTATCATTCA TTGACACATA CACATTTTGA CCTTTTTCTT CATCTCACTC 
    GA

AT5G11070.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11080.1

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11080.2

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
Ubiquitin-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25270.1).
Link
InterPro Scan - TAIR