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GT18383

CSHL Arabidopsis genetrap mutant lines

Original: GT18383

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT18383

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22885379 [Map]; Strand: w
      • AT5G56520.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18383 - 3-prime edge 
    AAATACAAAA TCTCCGGAGG TGGAACACAG ATATAGTTCC AGAACCATAA 
    AACGAAGCGA CCCGGTTGCT GAAGCGGAAA ACAACAAACG AGTTGTAACA 
    TCTCTCCGCT ACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 908516 [Map]; Strand: w
      • AT3G03680.1 - [+] show detail - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18383 - 5-prime edge 
    ACTCACCATC GATCGAATGC CGTTTCTATA CATTCGTGAA GCTAAAGCGA 
    AGCGAGCGAA GAACGATGGA AGCAATCCGG TTTACGCGAA GCTCGTGATC 
    GGAACAAATG GCGTGAAAAC CAGAAGCCAA ACCGGTAAAG ATTGGGATCA 
    AGTGTTTGCT TTTGAGAAAG AGAGCTTAAA CTCGACCTCG CTTGAAGTTT 
    CCGTTTGGAG TGAAGAGAAG ATTGAGAAGG AAGATAAAAC AACGACGACT 
    ACTGAGAGTT GTTTAGGAAC GGTGTCGTTT GATCTTCAAG AGGTTCCTAA 
    GAGAGTGCCT CCGGATAGTC CTTTGGCTCC TCAATGGTAC ACATTG

AT3G03680.1

Model type
Protein coding
Short Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Computational Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT1G74720.1); Has 14333 Blast hits to 8916 proteins in 1075 species: Archae - 59; Bacteria - 2640; Metazoa - 3947; Fungi - 1236; Plants - 1682; Viruses - 124; Other Eukaryotes - 4645 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56520.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55365.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR