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GT18386

CSHL Arabidopsis genetrap mutant lines

Original: GT18386

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT18386

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18386 - 3-prime edge 
    ACCGTTACCG ACCGTTTTCA TCCCTATACA CACATTATAC C

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18071107 [Map]; Strand: c
      • AT4G38670.3 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT4G38670.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT4G38670.2 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT18386 - 5-prime edge 
    GCTTTCGGTC ATAATCGCTG TCTAATTCCT TGCTTCTTTA TTGCTTGACA 
    TATCGAGTTT AACAATCTTT ACACGATTTT GATTGAATTG GTTTCACATG 
    GCAGCAGTTG AGCCAATTTC GTTCAAGATC ACGAATCGTT GCCGGAACAC 
    GATATGGCCC GGTTTGCTCT CTGGTGCTAA CTCTGCGCCG CTCCCCACAA 
    CTGGCTTTCA TCTCACTCGA CC

AT4G38670.1

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 1594 Blast hits to 1578 proteins in 180 species: Archae - 0; Bacteria - 39; Metazoa - 54; Fungi - 72; Plants - 1416; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38670.2

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 1592 Blast hits to 1576 proteins in 180 species: Archae - 0; Bacteria - 39; Metazoa - 55; Fungi - 72; Plants - 1413; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38670.3

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR