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GT18409

CSHL Arabidopsis genetrap mutant lines

Original: GT18409

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18409

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19832533 [Map]; Strand: w
      • AT5G48905.1 - [+] show detail - low-molecular-weight cysteine-rich 12
        Distance: 746; Region: intergenic
      • AT5G48910.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 339; Region: intergenic
    Flanking Genome Sequence: GT18409 - 5-prime edge
    CGGGGCAAAA TCGAGTTCAT GGTTTCCGGT ACCCCAAATC CAAGGCTGAT 
    AAGCTGTGCT TCTTTCAGCA AATCTTCCCC AACTGTCCCA TCTCAACTTT
    TTCTAACAGT TTTGCACTGT TCCAATAAAG CTAACAGCTA AAAATCTTGT
    ACAATTTTTG GTTACTAATC AGATCCATTA TGTTAGGGTT CTCCCTACTT
    TGAGAAAAAT CAGCCCAAAT GTCTAAGTAA TAAATATCTG AATGAGTTTA
    TTCTACTGTA TATATTTTAC ACACATAAAA CTTGGTTTCT TATAAATTTG
    AAGGAAGTTT TGATATTTTT TTGAATAAAA ACTTTGAGAC ATAATTCATC
    ATTTACCTTT TATATTACAA TTCATCAAGA TTTTTATTTT ATTACATTTC
    TAAACTACTG AATAAAAGAT TCAATTCTTA TAAATGTGGA GTCAGTAAAG
    AAACAACAGA GCTTGTGTAT ACACAGGGAA AGAGTCTTCC GTCTTTATGT
    TTAATTTCAC CAATAATCCA TACACGAGCA TGAGCCATCT TGGAAATGGT
    GAAAACGTTT CCGGTCTCGT ACCGTTATTT TTCTCTTGTA AACTTTGGAG
    ATGAGTTTGA TGG

AT5G48905.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 12
Curator Summary
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational Description
low-molecular-weight cysteine-rich 12 (LCR12); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 21 (TAIR:AT4G29283.1); Has 54 Blast hits to 54 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G48910.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Curator Summary
Encodes LPA66, a chloroplast protein of the pentatricopeptide repeat family. In lpa66 mutants, editing of psbF that converts serine to phenylalanine is specifically impaired. lpa66 mutants also display a high chlorophyll fluorescence phenotype.
Computational Description
LOW PSII ACCUMULATION 66 (LPA66); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR