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GT18418

CSHL Arabidopsis genetrap mutant lines

Original: GT18418

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18418

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 78611 [Map]; Strand: c
      • AT2G01080.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18418 - 5-prime edge 
    CGAGCAAAAT GCGGGGAGAA AAGAAGGGAG AAGAACCTGA ACACCCGGTG 
    AATCGAAATT CATGACTCGG ATCTTAGCCC CCACGTCTCC GCGGACTGTG 
    AGCTCCACTC GGTCGTTTAA GGAAGCATCT CTGACGAGAT CGGCGGCGTG 
    GGCTTGCATA AGATTGACTC TGTCGACGGA GATGGTGGCC TCAACGTTCT 
    TCGTACTGTG CGCATCCTGG TAGAATCCAG GCACCGTCGC CCTCCCCAGT 
    GGCATGCCTT TGTACATGAC CGTGAAGCTG GACTCACCGT ACCTGATTCC 
    GACCTTGTTT GGGTTGACGG CGGTGAAGAG CATCCGGATG GTGAGGGAGA 
    GGGAGGCGGT GGTTGGATCC AGAACAGCGC TTGGGTTGGA GATCCCCATG 
    TACACCACTG CCACTTGCTG CAGATCGAAC TGCGGCTTCT TCGGCTTCAC 
    CGCCAGTATT ACGATGAGCA CCACCGCCAG TACCAGCAGC GCCAGGAACG 
    CGAACAGCAA GAACAAGCAG CAGCAGCATC CCTT

AT2G01080.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G27080.2); Has 675 Blast hits to 674 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR