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GT18420

CSHL Arabidopsis genetrap mutant lines

Original: GT18420

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18420

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 380873 [Map]; Strand: w
      • AT4G00893.1 - [+] show detail - unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein m...
        Distance: 0; Region: exon2 (CDS)
      • AT4G00895.1 - [+] show detail - ATPase, F1 complex, OSCP/delta subunit protein
        Distance: -915; Region: promoter
    Flanking Genome Sequence: GT18420 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGATAAGC 
    ATCCTTGGCT TATGTGTTTT CCTAAACGTG GCAACTTGTT CGAGTTCCGC 
    GACCCTTTAC ACTGGAAGTT ACACACGTTG GATCTCCCAG AGTTAGCTGA 
    ATCAACTGTT TGTTACTCAA GATTCGGTTG GTTACTTATG CGTAAAGCTT 
    CATCAAACGA CGTGTTCTTC TTCAATCCGT TTTCTAGGGA TATCATAAGT 
    TTGCCAATGT GTGAGCTTGA TTTTCAGCAG ATTGCGTTCT CTTGTCCTCC 
    TACATCAGAT GATTGTGTGT TACTAGCGAT AAAGTTTGTT CCGGGTGAGG 
    GTAATCGTGT CACTGTCAGT ACTTGCAATC CTGGAGCAAC TAAATGGATT 
    ACTAACGACT TCCCTACTTT TCTGAGATTG TTTTACATGC AAAGCAACCT 
    TGTCTATCAG AGAGATCGAT TCTATTGCTT TAACGCTGAA GGAACTTTGT 
    ATAGCTTTGA ACCATCTTAT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 380930 [Map]; Strand: w
      • AT4G00893.1 - [+] show detail - unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein m...
        Distance: 0; Region: exon2 (CDS)
      • AT4G00895.1 - [+] show detail - ATPase, F1 complex, OSCP/delta subunit protein
        Distance: -858; Region: promoter
    Flanking Genome Sequence: GT18420 - 5-prime edge 
    TCCTACTTTC TCCCTGTGCA TATCGACTAC ACGAACAGAG ACACCAGCTT 
    CATACCATGA CTTACGAGCT GCTGATGCTC GTATGTTATC TTTTAAGACA 
    AGAAGTAACA TTATCTCCTC TATGAGGCTT GATGGTAGGT CAGCGAAAGT 
    CGGGTTCATG ATCTTTTTAC TGGAATCTTG AAATCTGCAA AACAATCAAC 
    TTTAAATTCT TCTCAAAGTG AAAGTTCTAA TATTTCAACA ACTGATCCAA 
    CCAAAAAAAA AAAAAAAAAA AACTTTTTAA AAAAAAATTT TTTTTTCAAT 
    TTTAAAAAAA CTTTTTTTTT TTGGGGAA

AT4G00893.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12370.1); Has 220 Blast hits to 215 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00895.1

Model type
Protein coding
Short Description
ATPase, F1 complex, OSCP/delta subunit protein
Computational Description
ATPase, F1 complex, OSCP/delta subunit protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: proton-transporting ATP synthase complex, catalytic core F(1), plasma membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 48 Blast hits to 48 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR