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GT18421

CSHL Arabidopsis genetrap mutant lines

Original: GT18421

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18421

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT18421 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATATAAC ATTCTACCCG 
    ACCGGATCGT ATCGGTAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 131758 [Map]; Strand: w
      • AT4G00305.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18421 - 5-prime edge 
    GATTCCGATG GACGATATGC TTCCGGCAAC AAATTCGAGG ATATATCATC 
    AAGGGTTAAT CCGCCGGAGA GCTGCCGGAT ATGCCAAGAT GAGTTCGACG 
    GCGGTGACGA AGTCCGGTGT TTGAGGAATT GCG

AT4G00305.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: brassinosteroid-responsive RING-H2 (TAIR:AT3G61460.1); Has 6452 Blast hits to 6437 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 1579; Fungi - 466; Plants - 3776; Viruses - 3; Other Eukaryotes - 628 (source: NCBI BLink).
Link
InterPro Scan - TAIR